Professor in biomedical data science at the University of Antwerp. Part-time CTO of ImmuneWatch. Immunoinformatics with a focus on T-cell receptors.
Belgium
Joined March 2011
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How can #AI help decode our #immune systems and help for next generation #diagnostics? Here is a technical overview from the @airr_community diagnostics working group on where we currently are on this challenge: doi.org/10.1016/j.immuno.202…
Very proud to have been a jury member at the newly revived @RSGBelgium hackathon! Exciting to see so many people giving their best efforts tackling challenging #bioinformatics problems. @iscbsc
The AIRR Diagnostics WG commentary is now available, wherein our members discuss both the challenges of current #AIRR-based #diagnostics, as well as the future directions that we see the field going into! #Immunology #tcr #bcr
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Ready to start the #ATCR25 meeting celebrating 10 years of the AUDACIS consortium with this amazing line-up of speakers!
Benson Ogunjimi opening the #ATCR25 conference, explaining the history of the meeting and the consortium.
#Abstract submission deadline for #ATCR2025 is this Friday!
We are again very grateful to have such a strong lineup of #Tcell receptor experts joining us in Antwerp. Currently at 80% capacity so do not wait to register.
uantwerpen.be/atcr2025
Pieter Meysman retweeted
RT + register to participate in the ISCB Wikipedia+ @iscb_scs Hackathon. A great opportunity to enrich #Bioinformatics articles.
Free registration for @iscb_scs and #ISMB attendees.
Details👇🏼 bit.ly/3Bf8kD5 🙏🏼 💻🎉. @i_am_kilpatrick
Participate in @iscb Wikipedia + @iscb_scs hosted virtual Hackathon during #ISMB2021 . Open to all @iscb_scs & ISMB attendees.
📅: 23 July 2021
Any question: ask organisers @propicee @i_am_kilpatrick @LonnieRWelch.
Hackathon and registration Details:iscb.org/ismbeccb2021-progra…
Pieter Meysman retweeted
The IMMREP25 TCR specificity prediction challenge is now live on Kaggle!
Get involved:
kaggle.com/competitions/immr…
Huge thanks to:
Matthew Noakes, Damon May, @EveRichardson20 @bpeters @AdaptiveBiotech @iedb_ @airr_community
Registration and abstract submission to #ATCR2025 are now open! Join world-renowned experts to discuss everything #Tcellreceptor related. #immunology @airr_community @biominaBE
uantwerpen.be/atcr2025
Very excited that today @FWOVlaanderen granted my two #immunology #AI research projects:
* One on modelling #Tcells after #vaccination with my good friend Benson Ogunjimi
* One on mapping the human #MHC presentation space with the ever talented Wout Bittremieux
The annual gathering of #Antwerp bioinformatics at the @biominaBE Research Day, kicked off by @KrisLaukens . Always amazing to see the varied #bioinformatics applications, from fish genomics to clinical biomarkers!
Pieter Meysman retweeted
A new paper, led by @kerry_mullan from Pieter Meysman’s (@chevaliersf) group, advocates for a TCR-centric approach to analyzing scRNA data from T cells. One highlight is the identification of melanoma- and colitis-specific TCR clusters. | @ScienceAdvances doi.org/10.1126/sciadv.adr31…
Massive effort by @kerry_mullan to recontextualize
data is now out in Science Advances! We developed a new system STEGO to do a TCR-first analysis, and reanalyzed 12 studies and more than 500 000 individual T-cells. Supported by @cziscience @ELIXIRnodeBE
doi.org/10.1126/sciadv.adr31…
We have kept building on the data set, and a larger version including annotations is available on Zenodo as a T-cell atlas.
zenodo.org/records/12606320
This is the first time we have been forced to include an 'Extended Discussion' section in the supplementals because there was just so much that we found. Rather than splitting it over a dozen smaller papers, we opted to put everything into one for a complete story.
Taking all the data together, we also find interesting patterns that occur across studies and individuals. One of them is very clearly MAIT cells, which appear nearly everywhere.
