This project provides tools for learning generative models of cell organization directly from images and synthesizing cell images from one or more models.
Pittsburgh, PA
Joined July 2016
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CellOrganizer retweeted
Nice Nature article on visualization in genomics! Some nice discussion from @asiepel of disseminating results through creating new browser tracks, and even a few nuggets at the end from yours truly 😅
nature.com/articles/d41586-0…
NEW RELEASE! CellOrganizer for @galaxyproject v2.8.0 has been released today. This release of the tools is compatible with the latest release and now allows the user to train SPHARM-RPDM models as well as exporting synthetic representations as @sbmlnews Spatial instances.
NEW RELEASE! CellOrganizer v2.8.0 is out! It now supports training and synthesis of SPHARM-RPDM models of nuclear and cell shapes, among other features. CellOrganizer for @Docker and @SingularityApp coming soon! cellorganizer.org/cellorgani…
CellOrganizer for @galaxyproject will be showcased tomorrow at @MMBioS Cell Modeling Workshop 2019.
CellOrganizer retweeted
Building up support for the Google Cloud Platform in Galaxy. New #UseGalaxy blog post by @EnisAfgan & Vahid Jalili galaxyproject.org/blog/2019-… @GCPcloud
Did you know @CellOrganizer for @galaxyproject has been featured in @MMBioS workshops at @AllenInstitute and @psc_live? A chapter on using the tools can be found in the book "Modeling Biomolecular Site Dynamics" from @SpringerNature springer.com/la/book/9781493…
Want to use #CellOrganizer but don’t have access to @MATLAB? #CellOrganizerforDocker is for you! It consists of compiled executables for the main #CellOrganizer tools inside a @Docker container that can be run on most systems. cellorganizer.org/news/2.7.2…
A new member has been added to the #CellOrganizer family. #CellOrganizerforGalaxy brings #CellOrganizer functionality to the @galaxyproject community. A public #CellOrganizerforGalaxy server has also been made available for academic use. cellorganizer.org/news/2.7.2
#CellOrganizer v2.7.2 has been released. The main update is to provide additional functionality to support our first release of #CellOrganizerforGalaxy. A new tool for combining models, slml2slml, has also been added. cellorganizer.org/news/2.7.2
New Release! #CellOrganizer v2.7.1 now includes methods to create informative reports from generative models. And with #CellOrganizer for @Docker, the main tools are available as @MATLAB standalone applications cellorganizer.org/2018/04/13…
CellOrganizer retweeted
Featured now: @CellOrganizer, generative models of cell organization. Vote it up at Labworm.com! Top 5 voted announced next week
