Biophysicist, single-cell method developer, stem cell enthusiast, guitarist.
Utrecht, The Netherlands
Joined February 2020
- Tweets32
- Following53
- Followers2.7K
- Likes103
Alexander van Oudenaarden retweeted
Very happy our scEdU-seq manuscript is published in @naturemethods! Big shoutout to @BVincentv, @AlexandervanOu1 @marcelvanvugt, @Acebron and @Anchel_91 for their contribution to the final product! For those interested here is the link to the paper rdcu.be/dK2hL
New scEdU-seq method developed by @AlexandervanOu1 group measures DNAreplication speed in individual cells & may provide new insights into DNAreplication, embryonic development & cancer. hubrecht.eu/method-dna-repli… @jervdberg @BVincentv @Acebron @Anchel_91 @marcelvanvugt @RBTjeerdsma
Alexander van Oudenaarden retweeted
Single cell enthusiasts, get your flip-flops ready!
Less than 24 hours until the registration to SCG2024 in Corinthia, Greece opens (April 3rd 3PM EU time) conferences.weizmann.ac.il/S…
Space is limited, don’t miss your spot!
Alexander van Oudenaarden retweeted
Register now! Registration and abstract submission now open until 14 March for EMBO Workshop on Systems biology: Linking chromatin and epigenetics to disease and development, 25 – 28 May 2023 in Alexandroupoli, Greece meetings.embo.org/event/23-s… #EMBOsysBio23
Alexander van Oudenaarden retweeted
Save the date!
Single Cell Genomics 2023 #SCG2023 takes place Oct. 9-11 2023 in the beautiful mountain town Engelberg in Switzerland!
10th year anniversary of this unique experience. @IdoAmitLab, @slinnarsson, @AlexandervanOu1, @MarioniLab, @sandberglab, Aviv Regev, Amos Tanay
Alexander van Oudenaarden retweeted
Happy to see the published version of scChIX-seq: a framework to learn dynamic relationships between histone marks in single cells.
nature.com/articles/s41587-0…
Alexander van Oudenaarden retweeted
The lab of @AlexandervanOu1 developed two new methods to study chromatin in single cells. Researchers can use these methods, published in @NatureBiotech and @NatureGenet, to increase our understanding of chromatin regulation during development. hubrecht.eu/new-methods-for-…
Alexander van Oudenaarden retweeted
Exhilarated to share our pre-print describing a novel method, scEdU-seq, to measure DNA replication forks and their speeds in singe cells. Many thanks to @AlexandervanOu1, @Bvincentv and others @_Hubrecht for making it happen!
biorxiv.org/content/10.1101/… – at Utrecht, The Netherlands
Alexander van Oudenaarden retweeted
We are recruiting group leaders at the Hubrecht Institute! Any topic welcome. A fantastic research environment, excellent financial support, very good students, no teaching requirement, great facilities and a very supportive and flat organization. Pls RT
hubrecht.eu/job/group-leader…
Alexander van Oudenaarden retweeted
At the @_Hubrecht, we are establishing the Hubrecht Talent Program to support underrepresented groups of students within the Netherlands. The first round of BSc students is recruited this year, deadline October 27th. Please spread. For further details see: hubrecht.eu/about-us/hubrech…
Alexander van Oudenaarden retweeted
High-throughput total RNA sequencing in single cells using VASA-seq go.nature.com/3u2ONDS
Alexander van Oudenaarden retweeted
The Hubrecht Insitute is looking for a new director! The vacancy is open until 1 March. Find all the information about this great opportunity and how to apply here: academictransfer.com/en/3069…
Alexander van Oudenaarden retweeted
At the @_Hubrecht Institute we are looking for a new director with @AlexandervanOu1 slowly reaching the 10th year of his turn. Please RT and forward … or apply directly! academictransfer.com/en/3069…
Alexander van Oudenaarden retweeted
The Single-Cell Core has a vacancy for a technician! Are you into single-cell (epi)genomics, curious by nature and excited to optimize our technologies to bring our facility to the next level? Let us know! More info on how to apply? Check the link below:
hubrecht.eu/job/technician-1…
Alexander van Oudenaarden retweeted
Our institute, the Hubrecht, is recruiting junior (tenure-track) and senior (tenured) group leaders. Fantastic scientific environment, very good (financial) support and a great place to live (Utrecht). Please retweet and apply!
eur02.safelinks.protection.o…
VASA-seq: a wonderful collaboration with labs that generously contributed their expertise in microfluidics @hollfelderlab, splicing @m_hemberg and dev bio @AMartinezArias & Jennifer Nichols. 🙏Fredrik Salmen @JoachimDeJonghe @annionna @ge_parada @T_S_Kaminski for the heavy 🏋️♀️🏋️♂️⤵️
Absolutely thrilled to share our VASA-seq pre-print on #biorxiv today: Droplet-based single-cell total RNA-seq reveals differential non-coding expression and splicing patterns during mouse development 🧵
biorxiv.org/content/10.1101/…
Our work on single-cell ribosome profiling is out! Huge congrats to @mvanins who was brave enough to embark on this pretty crazy experiment that turned out to work beautifully. Thank you @jervdberg, Amanda Andersson-Rolf and @HansClevers. Check it out: nature.com/articles/s41586-0…
Alexander van Oudenaarden retweeted
We are very excited to share our work in @Nature on developing scRibo-seq, a method for #singlecell ribosome profiling! With @jervdberg, Amanda Andersson-Rolf, @HansClevers, and @AlexandervanOu1 nature.com/articles/s41586-0… 1/15
Excited to share our preprints on single-cell chromatin profiling. sortChIC (biorxiv.org/content/10.1101/…) to profile active and repressive histone modifications during blood formation. scChIX (biorxiv.org/content/10.1101/…) to map multiple histone modifications in the same single cells.
Congratulations @SusannevdBrink for an outstanding PhD defence today. I learned so much from you during your time in the lab. Thank you for bringing #gastruloids to our lab and all the best in Barcelona!
Congratulations @SusannevdBrink for defending (in The Netherlands the committee is ‘the opposition’) her PhD thesis, under @AlexandervanOu1's supervision, and passing w/ flying colours (cum laude). Wonderful work on #SatelliteCells #gastruloids #scRNAseq #Tomoseq #TourdeForce
Alexander van Oudenaarden retweeted
Found one of the first #tSNE maps we ever made of #singlecell human data (pancreas, early 2014 in this case) at the @AlexandervanOu1 lab with @dominic_grun's RaceID! Back when single cell datasets were small enough to carefully look at each cell individually :)
