Scientist @qldhealth previously Research Fellow @childhealthqld. Interested in genomic variation, non-invasive diagnostics, cancer and rapid diagnosis
Brisbane, Queensland
Joined June 2017
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Presenting in a face-to-face conference after 3 years! #AGTA2022
@DevikaGanes discussing MultiGO: A multi sample approach for gene expression pathway enrichment analysis @agtaGenomics #AGTA2022
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Our work on WGS analysis of cell-free DNA in samples with low-tumour content is now published @BioMedCentral rdcu.be/cFo2l
We generated high coverage WGS data on plasma DNA (~100X) and matched germline (30X) and tumour (60X) WGS data on @illumina HiSeqX Ten.
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Register to join in person or virtually for the Era of Digital Medicine Webinar on 27th of October. Dr Chris Kelly from @GoogleHealth will be presenting on Artificial Intelligence in Healthcare. eventbrite.com.au/e/ai-in-he… @UQ_News @UQMedicine @krisgibbons84
Join tomorrow to hear about WGS analysis of cfDNA in breast cancer
Register >> mdhs.unimelb.edu.au/centre-f…
#UMCCRSeminar: Join Dr @DevikaGanes @UQMedicine TOMORROW, to understand the utility of whole-genome deep sequencing analysis of cell-free DNA in samples with low-tumour content, to detect tumour-derived alterations.
Register >> mdhs.unimelb.edu.au/centre-f…
Our paper on genotyping tandem repeat using targeted sequencing with @nanopore is published in @F1000Research f1000research.com/articles/9… @lachlanjmc @minhduc_cao @vmurigneux @taniapsduarte @c1zhou
Another joint first-author paper published! Our work on analysis of vector integration sites in transduced T cells using @nanopore sequencing is online in Journal for Immunotherapy of Cancer jitc.bmj.com/content/8/1/e00…
@QIMRBerghofer Siok Tey & Ping Zhang @lachlanjmc @shoangnguyen
Our new preprint on the analysis of transduced T cells to identify vector integration sites using @nanopore sequencing. Great collaborative work with Siok Tey and Ping Zhang from @QIMRBerghofer and our team @IMBatUQ @lachlancoin @shoangnguyen biorxiv.org/content/10.1101/…
@taniapsduarte from @IMBatUQ presenting her work on microbial infections in patients with cystic fibrosis at #agta19
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@Miranda_E_Pitt formerly @IMBatUQ now @TheDohertyInst presenting her work on XDR Klebsiella pneumoniae at #agta19
In action @UQwinterSchool! Thansk for the photos @DoktrNick Not sure what is going on with my hand movements🤔
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Excited to present our work on long-read targeted sequencing of tandem repeats @UQwinterSchool Attended winter school during my first year of post-doc as a newbie to sequencing analysis and 5 years later happy to be back as a speaker! #UQwinterschool
Our paper is #1 in @biorxiv_genomic! Great to see the interest in our work. Well done to the team! @ljcoin @minhduc_cao @taniapsduarte @c1zhou @vmurigneux and Mengjia Yan
"High-throughput multiplexed tandem repeat genotyping using targeted long-read sequencing" is the #1 paper on bioRxiv today in genomics. Congrats @DevikaGanes @vmurigneux. See it at -> assert.pub/biorxiv/genomics/… and assert.pub/papers/673251. Please retweet.
Our work on targeted sequencing of tandem repeats using @nanopore and @PacBio is on @biorxivpreprint biorxiv.org/content/10.1101/…
A versatile method for circulating cell-free DNA methylome profiling by reduced representation bisulfite sequencing biorxiv.org/content/10.1101/…
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Congratulations and good luck @taniapsduarte 👍
⚠️ #Queensland @AUSSOCMIC members ⚠️ The #NancyMillis student awards ceremony will be held on 22-Mar at @UQ_News. Please RSVP 👉goo.gl/6mSXZQ👈 This competition provides a valuable platform for young #scientists to present their #research #phdchat
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@Miranda_E_Pitt is using @nanopore sequencing to combat superbugs. Support her work by voting for her entry in QLD Women in STEM competition #WomenInSTEM #WomenInScience
I’ve entered in the QLD Women in STEM competition and would really appreciate your support! Voting for the People’s choice is now open thinkable.org/submission_ent…
@IMBatUQ @UQ_News @thinkable_org @witqld @WomenSciAUST @qldscience #WomenInSTEM 1/2
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Finally our @nanopore PromethION is working. More than 10Gb of data in 3hrs! Feeling excited for the possibilities @lachlancoin
Direct RNA sequencing of bacterial RNA using @nanopore Great job @Miranda_E_Pitt
Evaluating the Genome and Resistome of Extensively Drug-Resistant Klebsiella pneumoniae using Native DNA and RNA Nanopore Sequencing biorxiv.org/cgi/content/shor… #bioRxiv
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