Jason Yang (@JasonJuechen) profile picture

Jason Yang

@JasonJuechen

BMI PhD student @ University of Cincinnati, Cincinnati Children’s Hospital Medical Center

 Cincinnati, OH
Joined December 2013
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  • Followers14
Jason Yang retweeted
OncoDaily (@oncodaily) profile picture
OncoDaily
@oncodaily7 Nov 2024
Copper Drives Remodeling of Metabolic State and Progression of ccRCC @ElizSMcKenna @CD_AACR @BehrouzShamsaei @JasonJuechen @dina_secic @jarek_meller @MariaFranciszka oncodaily.com/insight/179543 #AACR #Cancer #OncoDaily #Oncology #MedEd #MedX #MedNews
Copper Drives Remodeling of Metabolic State and Progression of ccRCC - OncoDaily

Copper Drives Remodeling of Metabolic State and Progression of ccRCC - OncoDaily

Copper Drives Remodeling of Metabolic State and Progression of ccRCC / AACR, Behrouz Shamsaei, cancer, Dina Secic, Elizabeth McKenna, Jason Yang, John

oncodaily.com
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🎉 Thrilled to share that my first-author paper as a PhD student is officially in Cancer Discovery now: doi.org/10.1158/2159-8290.CD… Huge thanks to my mentors for their invaluable guidance, and to all my amazing collaborators for their support and insights throughout this journey.
Copper Drives Remodeling of Metabolic State and Progression of Clear Cell Renal Cell Carcinoma

Copper Drives Remodeling of Metabolic State and Progression of Clear Cell Renal Cell Carcinoma

Copper promotes metabolic remodeling in clear cell renal cell carcinoma by enhancing mitochondrial respiration, biosynthesis, and detoxification, fueling tumor progression and offering a target for...

aacrjournals.org
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First peer-reviewed paper during my PhD journey: science.org/doi/full/10.1126… Welcoming comments and feedbacks
Accelerating drug discovery and repurposing by combining transcriptional signature connectivity...

Accelerating drug discovery and repurposing by combining transcriptional signature connectivity...

Drug discovery can be accelerated by combining transcriptomic signature connectivity analysis with targeted docking simulations.

science.org
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Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma biorxiv.org/cgi/content/shor… #biorxiv_cancer
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📚 Thrilled to share the first paper of my PhD journey! 📷 Welcoming feedback and comments. 📷#PhDLife #AcademicTwitter #Research biorxiv.org/content/10.1101/….
Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma

Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma

Copper (Cu) is an essential trace element required for mitochondrial respiration. Late-stage clear cell renal cell carcinoma (ccRCC) accumulates Cu and allocates it to mitochondrial cytochrome c...

biorxiv.org
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Jason Yang retweeted
Kang Jin (@Kang_Jin__) profile picture
Kang Jin@Kang_Jin__7 Jun 2021
Our recent work on COVID-19 single cell meta-analysis using ToppCell. biorxiv.org/cgi/content/shor… Welcome to play with the data on ToppCell COVID-19 signature atlas on toppcell.cchmc.org/biosystem…
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Happy to share our latest computational tool -- scTriangulate, leveraging cooperative game theory to mix-and-match diverse cluster boundaries to achieve the optimal clustering results! (1/n)biorxiv.org/content/10.1101/…
Image from Guangyuan(Frank) LI (@FrankLI55917967)
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Every PhD teapawt.net/urupzia/status/1383518…
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A new database for children cancer PDX model query! academic.oup.com/nar/article…
PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-d...

PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-d...

Abstract. Although cancer is the leading cause of disease-related mortality in children, the relative rarity of pediatric cancers poses a significant chall

academic.oup.com
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Jason Yang retweeted
Xi Chen (@XiChenUoM) profile picture
Xi Chen@XiChenUoM9 Dec 2020
ATAC peak calling with MACS2: I know this is a recurring problem but I got asked a few times recently, so I just put all info here for my own ref. We now routinely convert paired BAM to simple BED file and use "-f BED --shift -100 --extsize 200" for the peak calling. Why? 1/7
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Very nice overview: Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. nature.com/articles/s41596-0…
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Replying to @tangming2005
Have you checked out bio.tools that's a cool resource offered by embl provides link outs to publications using the tool and altmetrics.
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there are so many genome fasta and gtf files available from different resources: UCSC, Ensembl, genecode. which files are recommended for RNAseq and DNAseq alignment? Heng's post answered some of it lh3.github.io/2017/11/13/whi… what about gtf, gtf should be compatible with fasta
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