Interested in electron microscopy in all its flavors, but lately especially in combining cryo electron tomography with artificial intelligence.
Leiden, The Netherlands
Joined February 2016
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Congrats! Providing tomograms with annotations will give an enormous boost for further developments for segmentation and identification!
Bram Koster retweeted
Precision super-resolution cryo-correlative light and electron microscopy for rapid in situ structural analyses of optogenetically-positioned organelles biorxiv.org/cgi/content/shor…
Today visiting the Francis Crick Institute in London! An amazing place where they perform awesome electron microscopy on such a wide variety of samples!
Bram Koster retweeted
napari-animation has had a much needed upgrade! 🥳
The @napari_imaging plugin now includes contributions from 10 people 😍🧑🤝🧑
Special thanks to @KA_Hutchings, a talented student from @cjrlab this summer, for many significant usability improvements! ⚒️
github.com/napari/napari-ani…
Bram Koster retweeted
We optmized in situ cryoET to achieve 6 A reconstructions of mouse sperm doublets! The unique tertiary structures allow de novo protein identification of novel sperm proteins by computationally searching in the AlphaFold2 library of entire mouse proteome! biorxiv.org/content/10.1101/…
Bram Koster retweeted
📢The speaker of the next I2PC Seminar Series on #CryoET will be Jorge Jiménez de la Morena from @CNB_CSIC
📔Talk: ScipionTomo: a cryoET framework.
⏰ Sept29th 15:00 Madrid GMT+2
conectaha.csic.es/b/bla-rkh-…
Bram Koster retweeted
This newly published review by eBIC staff discusses recent examples on how cryoET can be used to study membrane remodelling processes. Find the paper here:
doi.org/10.1016/j.sbi.2022.1…
Bram Koster retweeted
Seeking a postdoc to build super-resolution cryo-fluorescence microscope (#CLEM, #teamtomo) in collaboration with Huang group of #PurdueEngineering. Info and application at engineering.purdue.edu/Engr/….
Please RT!
Bram Koster retweeted
Correlative light electron microscopy using small gold nanoparticles as single probes. arxiv.org/abs/2209.07771
Bram Koster retweeted
Check out #DeepHEMNMA in #ContinuousFlexPlugin (ver 3.2.0) for @scipion_em:
github.com/scipion-em/scipio…
pypi.org/project/scipion-em-…
Bram Koster retweeted
🐣 New feature 🐣
You can now download datasets in webKnossos using the Python library. Just follow the steps indicated in the UI and integrate it in your own scripts!
Bram Koster retweeted
This recent paper in @Dev_Cell includes Serial Block Face Imaging on a @thermosciEMSpec Apreo Volume Scope followed by segmentation and visualization in Amira Software! Great study, and congrats to the authors.
Thanks! This first session of the conference was already so inspiring with all the tomography enthousiasts in 3D to talk to! Looking forward to catch up at a next meeting!
Bram Koster retweeted
How does the yeast nuclear pore complex ‘punch’ a hole in the nuclear envelope to create a functional transport channel? A recent collaborative study from the @KarstenWeisLab implicates the protein Brl1 in this membrane fusion event. More: biol.ethz.ch/en/news-and-eve…
On my way to #tomo2022! So much looking forward to it! I can't wait to meet old friends and make new ones with those I only know by name from papers or twitter! So many awesome developments! First, I have to bicycle to catch my train to be on time for the 1st session in 5 hrs.
