Genomic Data Scientist | Comparative Genomics | Data driven scientist | Husband | Father of two | he/him
Louisiana State University, LA
Joined October 2011
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Glad to share our latest publication.
We investigated high potassium-induced salt stress signalling in plants using multi-omics datasets.
@LSU_BioSci @lsuscience @ASPB #salinitystress #ClimateCrisis #extremophytes #genes #systemsbiology #dataanalysis #Genomics #Bioinformatics
Living with high potassium: balance between nutrient acquisition and K-induced salt stress signaling (Pramod Pantha, Dong-Ha Oh, David Longstreth, Maheshi Dassanayake) @Pramodpanth @inspirace @DassanayakeLab buff.ly/3UMsQDB @ASPB #PlantSci
Pramod Pantha retweeted
NCBI RefSeq: reference sequence standards through 25 years of curation and annotation academic.oup.com/nar/advance…
Pramod Pantha retweeted
Breakthrough in crops! 🌱 🔥💥
Using prime editing, Xu Lab engineered heat-responsive genes to optimize source-sink relations in tomatoes & rice.
Higher yields (+33% 🍅, +25% 🌾) & climate-smart crops for a warming world!#CROCS
@CellCellPress
Link: cell.com/cell/fulltext/S0092…
Pramod Pantha retweeted
Polyploid genomes are fascinating, but their complexity makes variant calling a challenge and definitely demands a smarter pipeline to solve allelic dosage uncertainty, sub genome homology and inheritance variation.
Insightful paper!
bsapubs.onlinelibrary.wiley.…
Pramod Pantha retweeted
Applications for AGBT Ag 2025 Next Gen Leadership Awards are now open!
AGBT is offering up to ten full-ride scholarships to enable promising graduate students, post-docs, and early-career scientists to attend #AGBTAg!
Submit your abstract to apply today: tinyurl.com/AGBT-Ag-Next-Gen…
Pramod Pantha retweeted
UC Davis is hiring Assistant Professor of Plant Genetics and Director of the Tomato Genetics Resource Center.
recruit.ucdavis.edu/JPF06784
Pramod Pantha retweeted
Our latest out today @Nature!
We revisit a century-old theory and show that metabolic gradients work hand-in-hand with genetic&signalling instructions to shape the embryo. Glucose isn't just an energy source, it acts as a major conductor of the body plan🍬
nature.com/articles/s41586-0…
Geaux Tigers, its a big win!!!
But we have a lot more to accomplish ahead this year. Keep fighting tigers.
Pramod Pantha retweeted
CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics nature.com/articles/s41596-0…
Pramod Pantha retweeted
Current challenges for plant biology research in the Global South
📖 nph.onlinelibrary.wiley.com/…
Viewpoint by Auge et al.
#PlantScience #GlobalSouth
ALT Geographical source of Arabidopsis articles.
Pramod Pantha retweeted
🚨 Excited to share this #preprint from my postdoc in the Lippman lab @CSHL, in collab. with @mike_schatz & many others! Using pan-genomics & pan-genetics across the Solanum genus 🍅🥔🍆 we reveal gene duplications 🧬 as contingencies in crop engineering. doi.org/10.1101/2024.09.10.6…
Pramod Pantha retweeted
Check out SVbyEye: A new visualization tool to characterize structural variation among whole-genome assemblies (biorxiv.org/content/10.1101/…)
Pramod Pantha retweeted
Our single cell analysis of dynamic transcriptional states in germinating embryos is on the cover of @NaturePlants today. Well done @LimCheeLiew @AurouxLucas @QGouil @YueYOU9 @molivarina @OliverBerkowitz @peirats_marta and team! @latrobe @plants4space doi.org/10.1038/s41477-024-0…
Pramod Pantha retweeted
This article completely misses the point. A major issue in biology right now is that engaging in data generation does not demand a substantial time investment in bioinformatics research. cell.com/cell/fulltext/S0092…
Pramod Pantha retweeted
🚨 Join us for the upcoming ASPB webinar on Friday, September 13 at 12 pm Eastern time, hosted by ASPB’s Early Career Plant Scientists Section (@ASPB_ECPS).
Free registration at buff.ly/4ejEJe8
#plantscience
ALT Image Text: ASPB Presents. Demystifying the NSF Fellowship Application Process. Featuring Shin-Han Shiu, Diane Okamuro, Samantha Snodgrass, and Taylor Scroggs. Friday, September 13, 2024 | 9 AM PDT | 12 PM EDT | 5 PM BST | 12 AM Beijing. The image also includes ASPB & NSF logo and headshot photos of Shin-Han Shiu, Samantha Snodgrass, and Taylor Scroggs.
Pramod Pantha retweeted
Just contributed another icon to Bioicons (bioicons.com/). This is a riparian plot (or synteny plot) that I made in PPT (bioicons.com/icons/cc-by-4.0…).
There are a lot of very nice vector graphics icons there. You can also contribute your own graphics.
Pramod Pantha retweeted
Scywalker: Scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing academic.oup.com/bioinformat…
Pramod Pantha retweeted
The field of #ComputationalBiology has changed dramatically in the last few years with #GenerativeAI.
I'm excited to be recording my lectures again this year, and to be teaching with the awesome @EjAlm.
You can find the first lecture here: youtu.be/1zZSPeKGRzw
and more will be coming in the playlist below.
Fall 2024: youtube.com/playlist?list=PL…
Spring 2021: youtube.com/watch?v=0jWOZoTs…
Fall 2020: youtube.com/watch?v=CTPs5HEL…
#CompBio #DeepLearning #MachineLearning #Genomics #Therapeutics #RepresenationLearning #Chemistry #ProteinFolding #ClinicalRecords #SingleCell
Today was my last lecture for @MIT #ComputationalBiology: #Genomes, #Networks, #Evolution, #Health. I recorded each and immediately posted online here: youtube.com/playlist?list=PL…
Please do share, and let me know which topics need more explanations, clarifications, and corrections!
