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PubMLST

@PubMLST

Public databases for molecular typing and microbial genome diversity. Follow us now on https://teapawt.net/t.co/0eiWNkW7wY.

 Oxford, UK
pubmlst.org/
Joined June 2020
  • Tweets133
  • Following180
  • Followers432
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Photo by PubMLST (@PubMLST)Photo by PubMLST (@PubMLST)Photo by PubMLST (@PubMLST)Photo by PubMLST (@PubMLST)Photo by PubMLST (@PubMLST)Photo by PubMLST (@PubMLST)Photo by PubMLST (@PubMLST)
BIGSdb v1.47.0 has been released and is now live on @PubMLST. This introduces an embargo system for isolate submissions. If enabled, submitters will now see an option to request an embargo when they submit isolates.
Image from Keith Jolley (@keithajolley)
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1st year PhD student @emPriyanshu with Sam Sheppard attended The 2nd IOI Oxbridge Cohort conference at Selwyn College, Cambridge @Cambridge_Uni @emPriyanshu talked about exploring Ribosomal protein as a plausible drug target. @IneosOxford @UniofOxford @OxfordBiology – at Cambridge, England
Image from Sheppard Lab (@sheppard_lab)
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Our 2018 paper describing PubMLST, the BIGSdb platform, and their applications has just reached 2000 citations on Google Scholar. ncbi.nlm.nih.gov/pmc/article…
Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their...

Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their...

The PubMLST.org website hosts a collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 100 different microbial species...

pmc.ncbi.nlm.nih.gov
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My first PhD paper is out - exploring mosaicism in the 𝑁𝑒𝑖𝑠𝑠𝑒𝑟𝑖𝑎 𝑝𝑒𝑛𝐴 gene at the population level! Very excited to share this work. Thanks are in order to @OdileHarrison and Martin Maiden @MaidenLab for their excellent supervision. microbiologyresearch.org/con…
Characterizing the diversity and commensal origins of penA mosaicism in the genus Neisseria

Characterizing the diversity and commensal origins of penA mosaicism in the genus Neisseria

microbiologyresearch.org
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Yesterdays viva celebrations after completing my PhD with no corrections! #PhDone
Group of people sat round a table in a restaurant smiling

ALT Group of people sat round a table in a restaurant smiling

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BIGSdb v.1.42.6 has been released. This version expands list query functionality to every table in the database – previously it was only possible to use lists to search by attribute values for isolates, profiles and alleles for single loci.
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Come and do a PhD with me and Tim. It'll be fun, I promise! @Overtonlab @ChemEngBham @IMIBirmingham
Tim Overton (@Overtonlab) profile pictureTim Overton@Overtonlab3 Nov 2023
Fully-funded PhD position now recruiting as part of @MIBTP1 with me & @JessicaMABlair: efflux pumps are used by bacteria to confer antibiotic resistance, but can they be used to pump out organic chemicals and so improve industrial processes? @ChemEngBham warwick.ac.uk/fac/cross_fac/…
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BIGSdb v1.42.5 has been released. This introduces a new plugin that provides a wrapper for ReporTree (pubmed.ncbi.nlm.nih.gov/3732…) – a tool for the automated identification of genetic clusters. BIGSdb powers all the databases on @PubMLST. github.com/kjolley/BIGSdb.
Image from Keith Jolley (@keithajolley)
Image from Keith Jolley (@keithajolley)
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I’d like to think PubMLST as a hub for data AND bioinformatic tools integration. This is one of the many examples. For my thesis, I found hicap very useful for Hinf serotype identification, and asked Keith’s help to do his magic so other users can easily access the tool ✨
Keith Jolley (@keithajolley) profile pictureKeith Jolley@keithajolley10 Oct 2023
PubMLST now incorporates serotype identification using results from hicap (@stephen_watts & @DrKatHolt) in H. influenzae genome records. Example at pubmlst.org/bigsdb?page=info…. Overseen by @made__krisna.
Image from Keith Jolley (@keithajolley)
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PubMLST now incorporates serotype identification using results from hicap (@stephen_watts & @DrKatHolt) in H. influenzae genome records. Example at pubmlst.org/bigsdb?page=info…. Overseen by @made__krisna.
Image from Keith Jolley (@keithajolley)
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Short-term opportunity to work with me and amazing people in our Gastro Bioinfo Team at @UKHSA. Come join us for sequencing bacterial pathogens and diving into the world of gastro illness investigation. tinyurl.com/BioinfoGastro
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Had an amazing session at EduCon 2023 which was all about diversity and inclusivity in teaching. Had the honour to deliver a bioinformatics worship for beginners for implementation in undergraduate courses. #educon2023 #ASM2023
Image from Shaxx Mowlaboccus (@ShaxxM8)
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Come and see the latest visual analytic developments on the PubMLST website at the #ABPHM23 bioinformatics showcase. youtu.be/mC22A4WYmhA
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Presenting one of my DPhil projects at @MaidenLab group: Development and Validation of Haemophilus influenzae core genome MLST scheme at @MicrobioSoc Annual Conference today as a Society Conference Grants recipient. P.S. The scheme has been implemented at @PubMLST too 😉
Image from Made Krisna (@made__krisna)
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BIGSdb v1.41.2 has been released. This introduces a choice of 26 colour palettes for use on front-end and query dashboards that can be selected by users. BIGSdb powers all the databases on @PubMLST. github.com/kjolley/BIGSdb.
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The paper that first described the BIGSdb platform that is used to host the @PubMLST databases has just reached 2000 citations on Google Scholar. pubmed.ncbi.nlm.nih.gov/2114… @MaidenLab
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Very excited to share our collaborative study by @RhysTWhite and #Chlamydians on #horses #parrots #chlamydia #WGS, enigmatic clonal ST24 and great use of @PubMLST in field studies @MicrobioSoc 👇👇👇 microbiologyresearch.org/con…
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If you use the Meningococcal Deduced Vaccine Antigen Reactivity (MenDeVAR) Index to test for Bexsero or Trumenba vaccine coverage of meningococcal isolates, note that this is now accessible via the PubMLST API, facilitating its use in analysis pipelines. pubmlst.org/organisms/neisse….
PubMLST

PubMLST

Public databases for molecular typing and microbial genome diversity

pubmlst.org
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Poster is now up for #IPNC2022. Showcasing new visualizations available on @PubMLST.
Image from Keith Jolley (@keithajolley)
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Replying to @HB_Bratcher
@HB_Bratcher demonstrating the #GenomeDetectives #CitizenScience project at the Oxford Biology Department launch event @cmc_rodrigues @MaidenLab @PubMLST @OxfordBiology
Image from Genome Detectives (@GenomeDetectiv1)
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