Yan Gao retweeted
If you have HiFi or Nanopore R10 metagenomic data, try myloasm from Jim Shaw. You will probably find more complete circular contigs to higher resolution especially for R10 or environmental samples. Scalable to >500GB data. Written in Rust. Published in
@NatureBiotech
Myloasm, our long-read metagenome assembler, is now published! w/ Max Marin & @lh3lh3
Very rewarding after > a year of development and countless hours thinking about assembly. Thanks to beta testers, Li lab, and reviewers for helpful feedback.
Link: rdcu.be/famFj
Yan Gao retweeted
Myloasm, our long-read metagenome assembler, is now published! w/ Max Marin & @lh3lh3
Very rewarding after > a year of development and countless hours thinking about assembly. Thanks to beta testers, Li lab, and reviewers for helpful feedback.
Link: rdcu.be/famFj
High-resolution metagenome assembly for modern long reads with myloasm - @lh3lh3 go.nature.com/3PBEwvR
Yan Gao retweeted
Long reads carry multiple small vars and SVs and their phasing. LongcallD is the only caller that tightly integrates germline/mosaic small/structural vars/MEIs and their phasing in a single C program. One command line to get competitive small variant calls and better SVs.
New preprint on longcallD: a unified framework for joint calling and phasing of small, structural and mosaic variants from long reads. Improved SV calling and competitive small variant calling. Supervised by @lh3lh3 , co-work with @QianAlvinQin1, @wwliao88 and @irahall9.
New preprint on longcallD: a unified framework for joint calling and phasing of small, structural and mosaic variants from long reads. Improved SV calling and competitive small variant calling. Supervised by @lh3lh3 , co-work with @QianAlvinQin1, @wwliao88 and @irahall9.
LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads biorxiv.org/content/10.64898… #biorxiv_genomic
Exicted to share our recent work, longcallD, for long-read variant calling. More features are coming! Many thanks to my supervisor Dr. Heng Li @lh3lh3!!!
longcallD is a new variant caller for genomic long reads. It jointly calls phased small and structural variants. Single binary, one command line for the whole process. Comparable accuracy to mainstream callers. Great work by Yan Gao. github.com/yangao07/longcall…
Yan Gao retweeted
longcallD is a new variant caller for genomic long reads. It jointly calls phased small and structural variants. Single binary, one command line for the whole process. Comparable accuracy to mainstream callers. Great work by Yan Gao. github.com/yangao07/longcall…
Yan Gao retweeted
Check out our new paper, "isoCirc catalogs full-length circular RNA isoforms in human transcriptomes". We report a nanopore long-read sequencing strategy and companion computational pipeline to characterize circular RNA isoforms of human genes. nature.com/articles/s41467-0…