Aquatic and computational microbial ecologist. Passionate about all things tiny and omnipresent—the good, the bad, and the unknown!

Germany, Kiel
Joined June 2012
Dr. “rare nut“ retweeted
Today is an emotional day for me. Together with Prof. John McCutcheon lab @ASU we have visualized by cryoEM what looks like a very funky ribosome from an insect endosymbiont. We believe there are important evolutionary implications. Here the pre-print: biorxiv.org/content/10.64898…
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Dr. “rare nut“ retweeted
Using ancient DNA recovered from a fossil bone, scientists have reconstructed a complete genome of the little bush moa, an extinct species of flightless bird that once roamed the forested islands of New Zealand. Learn more on #NationalFossilDay: scim.ag/4y9QYU1
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Dr. “rare nut“ retweeted
Always wanted to fix microbial cells while still enabling downstream DNA sequencing? Try the new microbial fixative: DSP Preprint is out now! doi.org/10.64898/2026.10.12.… Huge thanks to my collaborators @LoyTeam & Kenneth Wasmund & my supervisors @S_J_Mc & Gene Tyson!
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Applications are open for a free Structural Bioinformatics & Molecular Modelling workshop on 14 October. Learn protein structure analysis, PDB exploration and visualisation using bioinformatics tools. Register: docs.google.com/forms/d/e/1F…
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Dr. “rare nut“ retweeted
Why do small dogs live longer than large dog species, and what is the biologic basis of differences in lifespan and healthspan? Epigenetics. There's a lot in the methylation pattern of dogs to explain this @ScienceMagazine science.org/doi/10.1126/scie…
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Dr. “rare nut“ retweeted
Peatland metagenomes analyzed in this study contained almost 10k biosynthetic gene clusters, but only 9-27% were expressed in situ. These results show that genome mining alone would overstate active secondary metabolism. doi.org/10.1038/s41467-026-7…
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Dr. “rare nut“ retweeted
A streamlined and abundant Nitrosopumilus population retains vitamin biosynthesis under high purifying selection in the Baltic Sea biorxiv.org/content/10.64898…
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Dr. “rare nut“ retweeted
From 3,400 metagenomes of 362 lakes on seven continents, the authors reconstructed ~20,000 mitochondrial genomes of microbial eukaryotes, filling sparse branches of the eukaryotic tree such as SAR, Cryptophyceae and Haptista. A calibrated 98.1% identity threshold was used to delimit species, allowing comparison of protist richness and phylogenetic breadth across lakes, depths and seasons. doi.org/10.1038/s41467-026-7…
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Dr. “rare nut“ retweeted
New study with contributions from our lab, out in Nature Communications: across 87 European lakes, giant virus relative abundance nearly tripled from northern to southern Europe. Differences in light and resources helped explain their distribution, while lakes with more abundant and diverse giant virus communities tended to have lower primary production. nature.com/articles/s41467-0…
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Dr. “rare nut“ retweeted
I just released ReShiki v0.6.1, a free, open-source alternative to ChemDraw. Chemical drawing, reinvented. Built in Rust for macOS, Windows, and Linux. Draw molecules, build reaction schemes, and export figures. Try it: reshiki.com
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Dr. “rare nut“ retweeted
New study supported by our lab published in Cell: Incendiamoeba cascadensis, a newly described geothermal amoeba, divides at 63°C, setting a new upper temperature record for eukaryotic life. Comparative genomics and cell-biological analyses reveal adaptations linked to protein homeostasis, genome stability, and environmental sensing. sciencedirect.com/science/ar…
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Dr. “rare nut“ retweeted
Phylogenetics is getting a structural upgrade: unicore builds core-gene phylogenies using Foldseek and ProstT5, comparing protein structure rather than just sequence. A glimpse of where tree-building is headed. 🌳🧬 #RustLang #bioinformatics #phylogenomics github.com/steineggerlab/uni…
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Dr. “rare nut“ retweeted
In ten years of laboratory passage the tsetse symbiont Sodalis glossinidius lost 31 genes and encountered a 16,493 bp deletion, showing that genome decay continues without host selection. The genome consists of 49% pseudogenes, which is well above the roughly 1% found in free-living bacteria. doi.org/10.1371/journal.pntd…
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Dr. “rare nut“ retweeted
Microbial genomes have been extensively mined for new proteins, but the noncoding sequences between genes remain largely unexplored despite encoding important regulatory and functional information. In our new work, we asked whether gLM2 could help systematically discover these intergenic features. tatta.bio/intergenic-sae
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