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Keeping up with TEs

@TE_papers

I am a twitterbot posting #transposable element papers from #PubMed and #bioRxiv. Curated by @nels42

Joined March 2014
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Photo by Keeping up with TEs (@TE_papers)Photo by Keeping up with TEs (@TE_papers)
GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance dlvr.it/SHdBSP
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A quantitative, genome-wide analysis in Drosophila reveals transposable elements' influence on gene expression is species-specific dlvr.it/SHcbXT
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The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements dlvr.it/SHcR34
The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements - PubMed

The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements - PubMed

Transposable elements (TEs) are genomic parasites that can propagate throughout host genomes. Mammalian genomes are typically dominated by LINE retrotransposons and their associated SINEs, and...

pubmed.ncbi.nlm.nih.gov
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Life stage and the environment as effectors of transposable element activity in two bee species dlvr.it/SHcR2X
Life stage and the environment as effectors of transposable element activity in two bee species -...

Life stage and the environment as effectors of transposable element activity in two bee species -...

Diapause is a complex physiological phenomenon that allows insects to weather stressful environmental conditions. The regulation of diapause is accordingly complex, including signaling pathways that...

pubmed.ncbi.nlm.nih.gov
A large transposable element mediates metal resistance in the fungus Paecilomyces variotii dlvr.it/SHcR0v
A large transposable element mediates metal resistance in the fungus Paecilomyces variotii - PubMed

A large transposable element mediates metal resistance in the fungus Paecilomyces variotii - PubMed

The horizontal transfer of large gene clusters by mobile elements is a key driver of prokaryotic adaptation in response to environmental stresses. Eukaryotic microbes face similar stresses; however,...

pubmed.ncbi.nlm.nih.gov
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Restriction of transposable elements and genome evolution: A fine balance to set up dlvr.it/SHZqKt
[Restriction of transposable elements and genome evolution: A fine balance to set up] - PubMed

[Restriction of transposable elements and genome evolution: A fine balance to set up] - PubMed

[Restriction of transposable elements and genome evolution: A fine balance to set up]

pubmed.ncbi.nlm.nih.gov
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Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem Gene Duplications dlvr.it/SHZ82V
Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem...

Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem...

Retrotransposons are the most abundant group of transposable elements (TEs) in plants, providing an extraordinarily versatile source of genetic variation. Thlaspi arvense, a close relative of the...

pubmed.ncbi.nlm.nih.gov
Retrotransposons as a Source of DNA Damage in Neurodegeneration dlvr.it/SHZ80R
Retrotransposons as a Source of DNA Damage in Neurodegeneration - PubMed

Retrotransposons as a Source of DNA Damage in Neurodegeneration - PubMed

The etiology of aging-associated neurodegenerative diseases (NDs), such as Parkinson's disease (PD) and Alzheimer's disease (AD), still remains elusive and no curative treatment is available. Age is...

pubmed.ncbi.nlm.nih.gov
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Novel Putative Transposable Element Associated with the Subtype E5 Botulinum Toxin Gene Cluster of Neurotoxigenic Clostridium butyricum Type E Strains from China dlvr.it/SHYfMw
Novel Putative Transposable Element Associated with the Subtype E5 Botulinum Toxin Gene Cluster of...

Novel Putative Transposable Element Associated with the Subtype E5 Botulinum Toxin Gene Cluster of...

Previously, a whole-genome comparison of three Clostridium butyricum type E strains from Italy and the United States with different C. botulinum type E strains indicated that the bont/e gene might be...

pubmed.ncbi.nlm.nih.gov
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Transposable Elements in the Genome of the Lichen-Forming Fungus Umbilicaria pustulata and Their Distribution in Different Climate Zones along Elevation dlvr.it/SHYfK9
Transposable Elements in the Genome of the Lichen-Forming Fungus Umbilicaria pustulata and Their...

Transposable Elements in the Genome of the Lichen-Forming Fungus Umbilicaria pustulata and Their...

Transposable elements (TEs) are an important source of genome plasticity across the tree of life. Drift and natural selection are important forces shaping TE distribution and accumulation. Fungi,...

pubmed.ncbi.nlm.nih.gov
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Whole-Genome Transcript Expression Profiling Reveals Novel Insights into Transposon Genes and Non-Coding RNAs during Atlantic Salmon Seawater Adaptation dlvr.it/SHYfFs
Whole-Genome Transcript Expression Profiling Reveals Novel Insights into Transposon Genes and...

Whole-Genome Transcript Expression Profiling Reveals Novel Insights into Transposon Genes and...

The growing amount of genome information and transcriptomes data available allows for a better understanding of biological processes. However, analysis of complex transcriptomic experimental designs...

pubmed.ncbi.nlm.nih.gov
DARTS: An Algorithm for Domain-Associated Retrotransposon Search in Genome Assemblies dlvr.it/SHYfCZ
DARTS: An Algorithm for Domain-Associated Retrotransposon Search in Genome Assemblies - PubMed

DARTS: An Algorithm for Domain-Associated Retrotransposon Search in Genome Assemblies - PubMed

Retrotransposons comprise a substantial fraction of eukaryotic genomes, reaching the highest proportions in plants. Therefore, identification and annotation of retrotransposons is an important task...

pubmed.ncbi.nlm.nih.gov
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A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in these genomes dlvr.it/SHWxd0
A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in...

A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in...

The transposable elements (TE) represent a large portion of anuran genomes that act as components of genetic diversification. The LINE order of retrotransposons is among the most representative and...

pubmed.ncbi.nlm.nih.gov
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Whole-Genome Sequencing and Annotation of the Yeast Clavispora santaluciae Reveals Important Insights about Its Adaptation to the Vineyard Environment dlvr.it/SHWH2d
Whole-Genome Sequencing and Annotation of the Yeast Clavispora santaluciae Reveals Important...

Whole-Genome Sequencing and Annotation of the Yeast Clavispora santaluciae Reveals Important...

Clavispora santaluciae was recently described as a novel non-Saccharomyces yeast species, isolated from grapes of Azores vineyards, a Portuguese archipelago with particular environmental conditions,...

pubmed.ncbi.nlm.nih.gov
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Genetic and molecular mechanisms underlying root architecture and function under heat stress - A hidden story dlvr.it/SHQsfD
Genetic and molecular mechanisms underlying root architecture and function under heat stress-A...

Genetic and molecular mechanisms underlying root architecture and function under heat stress-A...

Heat stress events are resulting in a significant negative impact on global food production. The dynamics of cellular, molecular and physiological homoeostasis in aboveground parts under heat stress...

pubmed.ncbi.nlm.nih.gov
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The callus formation capacity of strawberry leaf explant is modulated by DNA methylation dlvr.it/SHQsb0
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Variation burst during dedifferentiation and increased CHH-type DNA methylation after 30 years of in vitro culture of sweet orange dlvr.it/SHMBcH
Variation burst during dedifferentiation and increased CHH-type DNA methylation after 30 years of...

Variation burst during dedifferentiation and increased CHH-type DNA methylation after 30 years of...

Somaclonal variation arising from tissue culture may provide a valuable resource for the selection of new germplasm, but may not preserve true-to-type characteristics, which is a major concern for...

pubmed.ncbi.nlm.nih.gov
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piggyBac-system-mediated genomic integration of large variant libraries for deep mutational scanning in mammalian cells dlvr.it/SHJxhk
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Finding and Characterizing Repeats in Plant Genomes dlvr.it/SHJZ2P
Finding and Characterizing Repeats in Plant Genomes - PubMed

Finding and Characterizing Repeats in Plant Genomes - PubMed

Plant genomes contain a particularly high proportion of repeated structures of various types. This chapter proposes a guided tour of the available software that can help biologists to scan automati...

pubmed.ncbi.nlm.nih.gov
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Transposable element activation promotes neurodegeneration in a Drosophila model of Huntington's disease dlvr.it/SHJZ18
Transposable element activation promotes neurodegeneration in a Drosophila model of Huntington's...

Transposable element activation promotes neurodegeneration in a Drosophila model of Huntington's...

Huntington's disease (HD) is an autosomal dominant disorder with progressive motor dysfunction and cognitive decline. The disease is caused by a CAG repeat expansion in the IT15 gene, which elongates...

pubmed.ncbi.nlm.nih.gov
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