New updates from DNALinux OmicsContainers! hub.docker.com/repository/do… hub.docker.com/repository/do…
Conway's Game of Life — drop-in canvas module github.com/ToyokoLabs/CGL dnalinux.com
New Docker available on OmicsContainers: Bakta, a modern version of Prokka
github.com/DNALinux/OmicsCon…
#Bioinformatics #DockerHub #DNALinux #ToyokoBio #OpenScience
Biopython 1.88 in OmicsContainers!
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
hub.docker.com/r/dnalinux/bi…
New Docker in OmicsContainers! CheckM2: Machine Learning for More Accurate Genome Quality Assessment
hub.docker.com/r/dnalinux/ch… #Bioinformatics #Genomics #Pangenome #Dockerhub #DNALinux #ToyokoBio #OpenScience
New docker! hub.docker.com/repository/do…
dnalinux/scrnaseq_r_workflow
PaperJev: trying JEV by filtering a week of new biology papers toyoko.io/paperjev-trying-je…
Toyoko retweeted
Nobel Prize winner Ada Yonath sadly passed away today. She was a legend for her pioneering work on figuring out the structure of ribosomes.
“Focus on what you love to do, what you want to know, first of all, or what you want to achieve, or what you want to do. If you want to be a performer, a dancer, it's okay with me, as long as this is really built in, and you can do it well. Courage is very important, but for science, curiosity is not enough, it should come with the courage. Really wish to understand something. If there is no wish like this, and they ask me where will I get the best salary, or I become more famous, or then I have no answer for that.”
New Docker available on DNALinux: SPAdes 4.2.0 hub.docker.com/r/dnalinux/sp…
The new logo for DNALinux
We designed the DNALinux logo with a core belief: that biological complexity, much like the diffraction pattern in Photo 51, can be decoded through structure, abstraction, and open systems. #rosalind #openscience dnalinux.com
New SRA Toolkit packages available on DNALinux hub.docker.com/r/dnalinux/sr…
sra-toolkit 3.4.1-bin: AMD64 only
sra-toolkit 3.2.1-deb: AMD64 and ARM64
Happy Star Wars Day!
May your pipelines be robust, your clusters never fail, and may the Fourth be with you!
New docker available: BWA 0.7.19 lnkd.in/dMGAk6Pc
Mapping low-divergent sequences against a larger reference genome
#NGS #sequencing #openscience
Our preprint is out! 🤖🧬 gffutilsAI: An AI-agent for interactive genomic feature exploration in GFF files
biorxiv.org/content/10.64898…
New papers posted on December 4, 2025:
5 in bioinformatics: biorxiv.org/collection/bioin…
7 in biophysics: biorxiv.org/collection/bioph…
3 in cancer biology: biorxiv.org/collection/cance…
4 in cell biology: biorxiv.org/collection/cell-…
4 in developmental biology: biorxiv.org/collection/devel…
🍁 Happy Thanksgiving from Toyoko! 🍁
From our small team to you and yours, thank you for being part of our journey.
We’re grateful for the partners, collaborators, and supporters who believe in what we are building.
Men have their darkness and their contradictions—some of them very notorious, like Watson's. Nevertheless, we must remember him as one of the architects behind the discovery of one of the most beautiful things in science: the structure of DNA. Farewell, James Watson!






















