Bioinformaticien au CBiB - Centre de bioinformatique de Bordeaux, passionné (entre autres !) de nouvelles technologies
Bordeaux
Joined March 2010
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RT @genetics_blog: If you can't afford bioinformatics you can't afford your sequencing experiment teapawt.net/janetteedson/status/88… #CBiBordeaux
ARS Nouvelle-Aquitaine : empêchement immédiat de la fermeture du Planning Familial - Signez la pétition ! c.org/2H6VKfGng8 via @ChangeFrance
Non à la Loi Duplomb — Pour la santé, la sécurité, l’intelligence collective. - Non à la Loi Duplomb — Pour la santé, la sécurité, l’intelligence collective. petitions.assemblee-national…
🆕New publication from our team! The SeuratIntegrate R package expands Seurat v5's integration capabilities, supporting 8 methods (R & Python-based) with tools for evaluating batch correction performance. #scRNAseq #Bioinformatics biorxiv.org/content/10.1101/…
2 engineers @aurbarre and Benjamin Dartiques from our lab @CBiBordeaux proudly participated 👏
🙌 BioHackathon Europe 2024 was held in Barcelona, Spain 🇪🇸 with 180 in-person participants and over 140 online, hacking through 30 bioinformatics projects.
🎯 Accelerating scientific innovation in #bioinformatics! #BioHackEU24
Read the news 👇 loom.ly/ulfdSC8
Alexis Groppi 🦋@agroppi.bsky.social retweeted
Excited to present our work on TrialMatchAI, a powerful #AI based tool for matching #cancer patients to #clinical #trials, developed by @majdabd33 from our #CNRS team, at the AI Meets Cancer Research Symposium 2024! 🧬
🔴📆 Save the date! 👉 Nov 11-12
🖥 'AI Meets Cancer Research Symposium 2024' 🔬
📍At #CNIOStopCancer
👥Organizers: #CNIOStopCancer @BSC_CNS @columbia #PMG #ColumbiaUniversity @columbiacancer @RabadanLab @Alfons_Valencia
🔗Registrations are open: cnio.es/eventos/ai-meets-can…
Third annual meeting and same pleasure to be part of this project with @MachaNikolski @majdabd33
🎉And with the end of its second day, the EOSC4Cancer General Assembly Meeting 2024 has come to an end.
Read more about the day: emp.onl/EISt-
Thank you to all project members and partners who joined!
@BSC_CNS
Alexis Groppi 🦋@agroppi.bsky.social retweeted
New publication from our team: DECOMICS – a Shiny app for unsupervised cell type #deconvolution & interpretation of bulk #omic data. Unlock insights from expression or methylation data with state-of-the-art deconvolution and enrichment analysis! #Bioinformatics @KarkarSlim
🖥️ "DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data" shares a tool to analyze #transcriptomic & methylome data w/ integrated visualization & interpretation capabilities doi.org/10.1093/bioadv/vbae1… #Bioinformatics
Alexis Groppi 🦋@agroppi.bsky.social retweeted
ChatNT: A Multimodal Conversational Agent for DNA, RNA and Protein Tasks instadeep.com/wp-content/upl…
Join us for our 3rd "Biologie Spatiale" webinar on April 22nd at 11:30am, hosted by the @CanceropoleGSO . Johanna Galvis-Rodriguez of IBGC Bordeaux will present her bioinformatics experience in analyzing MALDI imaging data. Network and discuss! #Bioinformatics #Spata2
Alexis Groppi 🦋@agroppi.bsky.social retweeted
Excited to announce that our DIMet tool @hecht_h @yguitton44 @Thomas_Daubon to analyse targeted isotope-labeled metabolomics data is now live on Workflow4Metabolomics Galaxy! Explore it under the "Isotopic Studies": workflow4metabolomics.usegal… #Metabolomics #Bioinformatics #DIMet
Appel à projets pour le développement de nouvelles méthodes, outils ou logiciels en bioinformatique @DepartementSBM @CBiBordeaux
sbm.u-bordeaux.fr/actualites…
Alexis Groppi 🦋@agroppi.bsky.social retweeted
I've drafted some personal suggestions for improving the usability of bioinformatic (command-line) tools, hoping all tools will be easy to install and use.😀
Pull requests are welcome.
github.com/shenwei356/perfec…
Alexis Groppi 🦋@agroppi.bsky.social retweeted
Le groupe de jeunes #chercheurs du département Sciences Biologiques et Médicales, SBM’s Young a organisé sa 5ème battle jeudi 15 février. 7 jeunes chercheurs ont débattu sur le thème de "l’IA : la #recherche sans chercheur, la #médecine sans #clinicien ?"
sbm.u-bordeaux.fr/actualites…
3 membres du laboratoire ont participé à cette battle sur l'intelligence artificielle 👏
sbm.u-bordeaux.fr/actualites…
@DepartementSBM
Alexis Groppi 🦋@agroppi.bsky.social retweeted
Exciting results from our lab by @domitille_ch presenting a novel atlas of hepatic innate immune cell atlas in #HCC and identifying THBS1+ Mreg cells as key in disease progression and poor prognosis. #Cancer #bioinformatics #SingleCell #research
cell.com/cell-reports/fullte…
Alexis Groppi 🦋@agroppi.bsky.social retweeted
Excited to present our lab's work on #Cancer #patient - #clinicaltrials matching powered by #AI at the AIMCR Symposium. Special mention to @majdabd33 who is pushing this effort in the context of the #EOSC4Cancer project.
#bioinformatics #research
The AIMCR Symposium welcomes speaker Dr. Macha Nikolski (@MachaNikolski @CNRS), CNRS Cellular Genetics Institute! We're eager to hear how AI-driven research advances cancer and microbiology studies! bit.ly/AIMCR_Registration
Alexis Groppi 🦋@agroppi.bsky.social retweeted
Infranum regroupe en son sein 5 grands projets : le campus à très haut débit Campus@THD, Doremi pour le calcul intensif et le Campus@Datacenter pour aller vers un cloud mutualisé, ces 3 projets connectés aux projets @NvelleAquitaine de réseau de collecte et de datacentre. – at Talence, France
Alexis Groppi 🦋@agroppi.bsky.social retweeted
À l’occasion de la plénière Infranum et en présence de la DGRI @sup_recherche, Karim Belabas, vice-président numérique @univbordeaux, commence par rappeler l’ambition initiale de mutualisation des datacentres et la démarche partenariale de ces infrastructures numériques.
