Daniel Hare (@daniel_hare1) profile picture

Daniel Hare

@daniel_hare1

Clinical Microbiologist | Genomic Epidemiology | Bioinformatics

 Dublin City, Ireland
Joined March 2020
  • Tweets35
  • Following138
  • Followers34
Given the recent interest in monkeypox, here's a few things that people should know about poxviruses from a virologist point of view (1/14)
190
3,261
450
9,789
A great overview of the national SARS-CoV-2 WGS programme by @CarinaBrehony Ireland number one in the world for turn around time to sequence result 🇮🇪
Image from Irish Society of Clinical Microbiologists (@iscm_micro)
5
20
1,365
BA.2, driven to near-zero levels by BA.5, still haunt us, spawning monstrous viruses that, after vanishing for months, burst forth, gnarled & hideous, in novel antibody armor. The latest, which I found skulking around India, has 13 spike mutations. 1/28 github.com/cov-lineages/pang…
BA.2 Sublineage with 13 mostly convergent spike mutations (India, 7 seq, 3 regions on Sept 15) ·...

BA.2 Sublineage with 13 mostly convergent spike mutations (India, 7 seq, 3 regions on Sept 15) ·...

Repository for suggesting new lineages that should be added to the current scheme - BA.2 Sublineage with 13 mostly convergent spike mutations (India, 7 seq, 3 regions on Sept 15) · Issue #1053 · co...

github.com
16
130
30
542
Dr Eva Lles (France), Dr Dan Hare (Dublin), Dr Meghan Guilfoyle (Canada) conferred with doctorates ⁦@UL⁩ today. Congratulations to them, their families & their supervisors! ⁦@MedicineAtUL⁩ ⁦@iscm_micro⁩ ⁦@ULHospitals⁩ ⁦⁦@nvrlucdireland⁩
Image from Colum Dunne (@ProfColumDunne)
1
3
1
23
1,668
Replying to @ProfColumDunne @nvrlucdireland @UL @CillianDeGascun @stapalato @MedicineAtUL @ULHospitals @iscm_micro
Huge thanks to @ProfColumDunne, @CillianDeGascun, @stapalato and all the teams @ULHospitals, @UL and @nvrlucdireland for the support and guidance over the last 2 years! Great to be over the line!
2
7
411
Delighted to see Dr Dan Hare ⁦@nvrlucdireland⁩ conferred with his MD ⁦@UL⁩ today. Supervised proudly by myself, ⁦@CillianDeGascun⁩ and ⁦@stapalato⁩ ⁦@MedicineAtUL⁩ ⁦@ULHospitals⁩ ⁦@iscm_micro⁩
Image from Colum Dunne (@ProfColumDunne)
5
2
2
19
4,613
It was a pleasure to present on the success of our “Pathogen Genomics an introduction for clinicians” training day at the inaugural COP meeting @t3connect @sangerinstitute wouldn’t have been possible without a great team. @CarinaBrehony @daniel_hare1
Image from Sinéad O'Donnell (@sinead802)
2
5
2
27
3,846
What’s new in the world of SARS-CoV-2 accessory proteins? In this 🧵, I’ll recap their evolution so far & describe a possible new trend: partial or total deletion of ORF7a, ORF7b, & ORF8—particularly in GW.5.1.1, an XBB.1.19 + FLip lineage—plus an ORF9b/N bonus TRS surprise! 1/45
Image from Ryan Hisner (@LongDesertTrain)
Image from Ryan Hisner (@LongDesertTrain)
12
111
16
362
109,772
This evening our study, led by @daniel_hare1, won a @RAMIreland award. The @jhieditor paper described detection of #covid spread in a busy hospital. 🏅partnership @UL @ucddublin @ULHospitals @stapalato @CillianDeGascun @docnoodles @Jamesfromtipp
Image from Colum Dunne (@ProfColumDunne)
3
7
21
3,335
And we are off! The first “Pathogen Genomics an Introduction for Clinicians” training day. Delighted to welcome trainees from across the country, north and south! @FfitzP @RCSI_Micro @RCSI_Irl @t3connect
Image from Sinéad O'Donnell (@sinead802)
1
4
1
25
1,770
New publication - Adeno-Associated Virus 2 and Human Adenovirus F41 in Wastewater during Outbreak of Severe Acute Hepatitis in Children, Ireland. bit.ly/3llzTY6 HPSC was delighted to collaborate with UCD, UCC, Irish Water, Hokkaido University & CHI Crumlin.
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
10
15
3,309
Replying to @hpscireland @ECDC_EU @nvrlucdireland @TheQuadram @ULHospitals
Dr Jonathan Dean @nvrlucdireland took us back in time to the evolution of SARS-CoV-2 sequencing at the National Virus Reference Laboratory
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
2
2
6
The COVID-19 whole genome sequencing experience in University Hospital Limerick was described by Dr Patrick Stapleton and Dr Daniel Hare at today's WGS conference in Dublin Castle.
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
4
1
16
There was an opportunity for our in-person attendees to participate in a Q&A with our speakers from this morning's session of the SARS-CoV-2 Whole Genome Sequencing Surveillance conference in Dublin Castle
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
3
6
Dr Andrew Page from @TheQuadram , our first international speaker of the day, presented 'Case studies in Molecular Epidemiology of SARS-CoV-2' at the Whole Genome Sequencing conference in Dublin Castle.
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
6
13
This morning's second speaker from @TheQuadram is Prof @Justin_OGrady on 'Sequencing based characterisation in infection - future perspectives'
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
5
7
The keynote speaker at today's SARS-CoV-2 Whole Genome Sequencing Surveillance conference is Karin Johansson from @ECDC_EU describing 'EU-level WGS support for public health - SARS-CoV-2 and beyond'
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
3
3
We learned from Morten that the SARS-CoV-2 sequencing and surveillance lift in Denmark was just insane! Practically every case in 2021 sequenced within a few days, immediately linked to any metadata imaginable and all of it informed national policy in real-time 🤯 🤯 🤯
HSE Health Protection Surveillance Centre (HPSC) (@hpscireland) profile pictureHSE Health Protection Surveillance Centre (HPSC)@hpscireland13 May 2022
Replying to @hpscireland
Dr Morten Rasmussen from @SSI_dk has kicked off the afternoon session with a view from Denmark - “Establishing SARS-CoV-2 surveillance in Denmark: Lessons from a pandemic”
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
2
COVID-19 Genomics UK Consortium’s @CovidGenomicsUK Dr Catherine Ludden described “Deriving actionable information from SARS-CoV-2 genomes”
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
4
5
Our colleagues from @SantePubliqueFr Dr Bruno Coignard and Dr Anna Maisa presented on lessons learned from France - “The French EMERGEN SARS-CoV-2 genomic surveillance programme”.
Image from HSE Health Protection Surveillance Centre (HPSC) (@hpscireland)
1
2
4
Load more