deepImageJ retweeted
Less than 24h for an exciting exercise that says "Load, use and fine-tune models from @bioimageio using #DL4MicEverywhere... and export them back to the #BioImageModelZoo format to reuse them in @ilastik_team @deepImageJ @Icy_BioImaging let's see how optimistic this can be 😎
🔬💻 The @EBItraining virtual course "Microscopy data analysis: machine learning and the BioImage Archive" starts today! The week comes packed with insights into #ZeroCostDL, @BioimageA, AI4Life tools, and more!
deepImageJ retweeted
Mark your calendars! 🗓️ 🖊️
I2K (From Images to Knowledge), the conference where bioimage methods research meets research software engineering meets biology, will welcome you at @humantechnopole in Milan from Oct. 23rd to 25th!
Influence the agenda here: forms.gle/v5brzZ9RnTU4WvCr6 – at Uckfield, England
deepImageJ retweeted
Always happy to share great ideas with greater people! Some hints on the pictures?🤐🤭
An incredible week at @uc3m with the deepImageJ & friends hackathon! 🌟 Filled with brilliant ideas, hard work, and fantastic people. ✨👏 Stay tuned for the outcomes coming soon... the excitement continues! 🚀👀
deepImageJ retweeted
Amazing people doing amazing work makes an absolutely amazing experience! ✨
An incredible week at @uc3m with the deepImageJ & friends hackathon! 🌟 Filled with brilliant ideas, hard work, and fantastic people. ✨👏 Stay tuned for the outcomes coming soon... the excitement continues! 🚀👀
deepImageJ retweeted
Thanks to the @deepImageJ team for an incredible few days at the hackathon! Truly enjoyed working with such a amazing group! 🥰
An incredible week at @uc3m with the deepImageJ & friends hackathon! 🌟 Filled with brilliant ideas, hard work, and fantastic people. ✨👏 Stay tuned for the outcomes coming soon... the excitement continues! 🚀👀
deepImageJ retweeted
Our abstract has been accepted for #EHRA2024! Exciting news—we'll be presenting it as finalists in the Young Investigator Award (YIA) Basic Science session!
#ArtificialInteligence #Electrophysiology #PersonalizedMedicine @escardio @uc3m @ciencia_uc3m @iisgmaranon
deepImageJ retweeted
Thrilled to announce our latest paper, 'JDLL' is now published in @NatureMethods! A perfect start to the New Year 🥳 and a fantastic gift from the Reyes Magos! 🌟 Check it out here: rdcu.be/dvqwn Happy Reading & Happy New Year to all! 📚🎆
@Icy_BioImaging @deepImageJ
🎉Exciting news! The @Icy_BioImaging team, along with @deepImageJ, is thrilled to announce the release of the 𝗝𝗮𝘃𝗮 𝗗𝗲𝗲𝗽 𝗟𝗲𝗮𝗿𝗻𝗶𝗻𝗴 𝗟𝗶𝗯𝗿𝗮𝗿𝘆 (𝗝𝗗𝗟𝗟), the new open source core library for #DeepLearning model inference in imaging! 🤖
deepImageJ retweeted
📢🎉 Announcement! We are proud to introduce you to the BioImage.IO Chatbot 🤖! An #AI-powered assistant augmented by a community knowledge base, for navigating the world of #BioImageAnalysis
📃 Preprint: arxiv.org/abs/2310.18351
(1/9)
deepImageJ retweeted
⏰ Time's ticking! Registration for the Hackathon & Solvathon closes in just a few days on September 8th. Don't let this opportunity slip away!
bit.ly/AI4Life-registration-…
deepImageJ retweeted
The new evolved deepImageJ is out now💥💥
This highly anticipated new version will fulfill a multitude of needs that the community has fervently expressed! @deepImageJ #JDLL
📢 Exciting news! We are thrilled to announce the launch of deepImageJ 3.0! 🎉 Our latest release brings, thanks to the connection with #JDLL, new features and improvements to enhance your image analysis workflows in @FijiSc
deepimagej.github.io/
deepImageJ retweeted
Finally, the new release of @deepImageJ is out!!🥳🚀👯 Do not miss all the new and enhanced features it brings👇 ❤️
We're really looking forward to the new pipelines you come up with and fresh feedback 🤓
Some of the new features👀
👥Users: Multi-step DL pipelines, BioImage Model Zoo (bioimage.io) compatibility, Faster predictions, Large image processing #ImLib2
👩🏻💻Developers: Agnostic DL engines in @FijiSc (TF 1, 2 and PyTorch) #imageprocessing
🚀Let's dive in!
deepImageJ retweeted
Following Jean-Yves’ inspiring testimonial @jytinevez, I’m pleased to share some backstory chapters of the JDLL project! While the idea had been brewing in our minds for quite some time, it truly gained momentum during my UC3M Chair of Excellence stay at Arrate's lab @ArrateMunoz in Madrid in fall 2021. It was a stimulating period as Estibaliz @gomez_mariscal had just read her PhD thesis, and their remarkable deepImageJ @deepImageJ paper had been published in Nature Methods, acting as a catalyst for the Icy team to channel their time and energy into deepIcy. We were fortunate that Carlos @carlosg91018370, a talented developer with a wealth of experience in deepImageJ, was both available and keen on pushing the boundaries of Java libraries for deep learning in bioimaging. Collaborating with Stéphane, they embarked on a complete redesign of the initial deepIcy @deepIcy_IP prototype that would become JDLL, incorporating cutting-edge advancements in Java/Python interfaces and more. Now, the rest of the story is in your hands, as we present you with the tools to shape the future of deep learning for bioimaging data analysis. Be creative and have fun!
Jean-Christophe
deepImageJ retweeted
Also, because ImgLib2 is very generic, it will allow for using JDDL with any of the software consumer platforms in Java. Let’s start with @FijiSc , @deepImageJ and of course @Icy_BioImaging ! I hope that we can reach out to more platforms.
deepImageJ retweeted
👏@Icy_BioImaging (open-source software funded by @Fr_BioImaging and @institutpasteur) with @deepImageJ released JDLL, the Java Deep Learning Library. JDLL enables users to make inference with Deep Learning models in a fast and simple manner!
Learn more here⤵️
🎉Exciting news! The @Icy_BioImaging team, along with @deepImageJ, is thrilled to announce the release of the 𝗝𝗮𝘃𝗮 𝗗𝗲𝗲𝗽 𝗟𝗲𝗮𝗿𝗻𝗶𝗻𝗴 𝗟𝗶𝗯𝗿𝗮𝗿𝘆 (𝗝𝗗𝗟𝗟), the new open source core library for #DeepLearning model inference in imaging! 🤖
deepImageJ retweeted
halo #javadevelopers!! 🗣️Did you see the last masterpiece 🌟 of @carlosg91018370 and colleagues @Icy_BioImaging @deepImageJ for 𝗗𝗟 𝗲𝗻𝗮𝗯𝗹𝗲𝗱 #𝗯𝗶𝗼𝗶𝗺𝗮𝗴𝗲𝗮𝗻𝗮𝗹𝘆𝘀𝗶𝘀 😎? 👇 Looking forward to new tools and pipelines exploiting it 😍
#JDLL
arxiv.org/abs/2306.04796
🎉Exciting news! The @Icy_BioImaging team, along with @deepImageJ, is thrilled to announce the release of the 𝗝𝗮𝘃𝗮 𝗗𝗲𝗲𝗽 𝗟𝗲𝗮𝗿𝗻𝗶𝗻𝗴 𝗟𝗶𝗯𝗿𝗮𝗿𝘆 (𝗝𝗗𝗟𝗟), the new open source core library for #DeepLearning model inference in imaging! 🤖
deepImageJ retweeted
Dinner and hands on into Fiji!! We survived the first evening session 💪 second one happening today with #zerocostdl4mic, #stardist @deepImageJ and the @bioimageio 🤯 😎
Ready to follow up! 72 slides and 4 folders for the beginner's group of the first analysis session: #FijiIntro, #registration, #illuminationcorrection, #instancesegmentation 😎 prepared together with @cbouchard_22 and Renaud Bernatchez 🙏
deepImageJ retweeted
Soon it will be integrated into #Icy and ImageJ/Fiji (via #deepImageJ) boosting their image analysis capabilities.
For more information, please visit the official GitHub repository: github.com/bioimage-io/JDLL
Or link to the preprint: arxiv.org/abs/2306.04796
deepImageJ retweeted
🧠 Now Pytorch, Tensorflow 1 and 2 and Onnx models can be easily and efficiently run together in any Java application.
#JDLL will make the use of Deep Learning more accessible to Java developers and imaging applications users.



































