
News from Dr. James Gardner's lab @UCSF, @UCSFtransplant, & @Atucsf, focusing on advances in basic immunology and immune tolerance.
UCSF Parnassus
Joined November 2021
- Tweets98
- Following651
- Followers472
- Likes450
Gardner Lab retweeted
Excited to introduce CRISPR-All! – a flexible, high-throughput framework that combines virtually any perturbation modality (CRISPRko, CRISPRi, CRISPRa, shRNA, knock-in, base/prime editing, etc.) in the same cell, at scale.
Paired with single-cell RNA-seq @10xGenomics and rich phenotypic readouts, it unlocks massively combinatorial genetic screens and new cell states previously out of reach.
Outstanding work led by @Roth_Lab @AustinMHartman
biorxiv.org/content/10.1101/…
Gardner Lab retweeted
Congrats to my former @UCSF next door neighbor Sonja Schrepfer and colleagues on taking a key step towards restoring beta cell function in people with T1D without immunosuppression. This moves us towards a cure! @Sana_Biotech @NEJM @AtUcsf
Brief Report: Survival of Transplanted Allogeneic Beta Cells with No Immunosuppression nej.md/3TXVgwp
@ttsorg | #WTC2025
Gardner Lab retweeted
🌟Exciting ‼️@UCSF Transplant Surgeon Dr. Shareef Syed has been selected as an Associate Member of the @AmCollSurgeons Academy of Master Surgeon Educators. This Fall, he'll be officially inducted into the academy in Chicago. Congratulations, Dr. Syed🏅
Gardner Lab retweeted
Achieving and maintaining harmony between the liver and the host immune system is critical for liver graft health. Dr. @SandyFeng8, Vice-Chair of Research has earned a $7.2M @NIAIDNews grant to decode the tipping point between calm and crisis in children with liver transplants‼️
Gardner Lab retweeted
Just released our pre-print on bioRxiv for UNCOVERseq, an improved off-target discovery platform for Cas9 and base editors! Great collaboration with the awesome team at IDT @idtdna
biorxiv.org/content/10.1101/…
Gardner Lab retweeted
‼️We’re happy to share that @UCSF Fellow Dr. Hillary Braun is staying in San Francisco and will be joining the Division of Transplant Surgery @UCSFTransplant as Assistant Professor of Clinical Surgery after completing her Abdominal #Transplant Surgery Fellowship👏👏
Gardner Lab retweeted
CHOIR is officially published @NatureGenet. No more arbitrary decisions in clustering. Add this to your single-cell toolbox - it will save you so much heart ache. And now it can scale to millions of cells. Compliments of the very talented @cathrine_sant.
CHOIR is now online @NatureGenet! CHOIR is a new clustering method for single-cell data that evaluates whether clusters represent statistically distinct cell populations. CHOIR scales to millions of cells and works with single-/multi-omic data of any type!
nature.com/articles/s41588-0…
Gardner Lab retweeted
check out this amazing free software for flow analysis. say goodbye to flowjo.
A new version of Floreada.io is out! This version adds the ability to export FlowJo workspaces and ACS files. It adds features to make pipelines and gates more intuitive. Also, our FCS file editor can now remove and reorder parameters. Try it out now! #flowcytometry
Gardner Lab retweeted
From “preprint” to “in press”!
Congrats @MValdearcos @RachelLippert and the rest of our outstanding team. @AtUcsf @UCSF #microglia #hypothalamus
Microglia mediate the early-life programming of adult glucose control: Cell Reports cell.com/cell-reports/fullte…
Gardner Lab retweeted
Proud of our fantastic @UCSFMedicine medical student Han Yin @hansyin96 who presented our combined supra-&infra-mesenteric robotic technique for mid D3 tumors #SAGES2025. A complex topic, masterfully delivered.👏🎉
@HPB_Surgeon @UCSFSurgery @UCSFGSResidency
Gardner Lab retweeted
Spend some time reading the March Literature Watch "A trip down (obesogenic) memory lane" by Sarah Alshammery and Natasha M. Rogers: doi.org/10.1016/j.ajt.2025.0…
Gardner Lab retweeted
🚨Excited to share our latest work, now out in @NatureBiotech ! We introduce SEED-Selection, a powerful method that enables high-efficiency enrichment of T cells edited at multiple loci in a single step 🧵👇
🔗 nature.com/articles/s41587-0…
Gardner Lab retweeted
‼️Dr. Holger Willenbring, @UCSFLiverCenter Director and @UCSFTransplant Surgeon Dr. Garrett Roll explore AAV capsid prioritization in normal and steatotic human livers maintained by machine perfusion in their latest paper published in @NatureBiotech 👉 nature.com/articles/s41587-0…
Gardner Lab retweeted
Our final section, Cell Engineering🧫🧬 @HuiCharlotte of @j_eyquem/@yimmieg labs will start things off, followed by Lauren Tabor of the Bruno lab and Marta Borowska of the Garcia lab! We are stoked for our keynote Dr. Jennifer Doudna @doudna_lab 🤩 can’t wait to see you there!
RT @BrisaPalikuqi: Please RT:
📢 Exciting Opportunity! 📢
The Brisa Palikuqi Lab at Yale Med is hiring a Postgrad Research Associate in Ste…
Gardner Lab retweeted
Happy to share our new work describing DESynR genes!
The evolution of new human protein-coding genes relies on repurposing protein domains from ancestral genes, rather than de novo sequence creation. New genes evolved from old parts, and while we have methods that enable high-throughput generation and screening of base-pair level sequence evolution (mutagenesis, directed evolution, CRISPR, etc), we lack similar scalable technologies for domain-level evolution.
We developed a high-throughput combinatorial molecular assembly method to generate thousands of barcoded novel genes from the domain building blocks of natural genes, termed DESynR (Domain Engineered via Synthesis and Recombination) genes.
Gardner Lab retweeted
Our latest paper with @Molofsky_lab is out! tweetorial to follow. Group 2 innate lymphoid cells promote inhibitory synapse development and social behavior | Science science.org/doi/10.1126/scie…
@jerika_barron @ Nick Mroz
Gardner Lab retweeted
In @JExpMed Tam, Cyster et al @UCSF report that a lymphoma-associated gain-of-function GPR34 variant promotes immune cell accumulation in the peritoneal cavity & demonstrate that this accumulation requires the lysophosphatidylserine-generating enzyme PLA1A hubs.la/Q02TF8bV0
Gardner Lab retweeted
Wanted to share our work - 3400 HCC patients with improving survival over time highlighting importance of surveillance & early detection.
@UCSFSurgery @UCSFGSResidency @UCSFTransplant @UCSFLiverCenter @KPDOR @NCSP_UCSF
jamanetwork.com/journals/jam…
Gardner Lab retweeted
Keep up to date with the latest AJT Literature Watch: "Impact of short-term vegan versus ketogenic diets on human immunity and microbiome" by Horner et al.
doi.org/10.1016/j.ajt.2024.0…





























