
Peds Heme Onc Fellow @Stanford/@LPCH | Formerly @UCSFPediatrics | MD/PhD @StanfordMed @mbarnalab | @PDSoros | Physician-Scientist | Gene regulation, RNA bio
@geraldctiu.bsky.social
Joined February 2018
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Gerald Tiu retweeted
Thrilled to share my freshly "baked" Baker lab paper. We took a bottom-up approach to designing transcriptional regulators. Instead of relying on natural activation domains, we designed compact proteins that recruit specific cofactors. Activators for now, repressors to come!
Ever wonder if tRNAs can regulate the identity of a cancer cell?
@HsiehLab @FredHutch postdoc @yeonsookim_phd did and discovered a single tRNA that can control lineage dependency and drug sensitivity in prostate cancer published today @Nature: nature.com/articles/s41586-0…
Gerald Tiu retweeted
BREAKING NEWS
The 2026 #NobelPrize in Physiology or Medicine has been awarded to Karl Deisseroth, Peter Hegemann and Georg Nagel “for their discoveries concerning light-gated ion channels and optogenetics.”
Gerald Tiu retweeted
Inspired by Gibson cloning, we describe prime assembly, now published, for in cellulo targeted integration of gene-sized DNA fragments using prime editing. nature.com/articles/s41586-0…
Gerald Tiu retweeted
Cell–cell interactions are key to all biological processes, but there hasn't been a good way to perform inter-cellular screens for genetic regulators of these interactions in vivo.
We developed match-seq (multiplexed associative tagging of cell interaction histories) - using engineered virus-like particles to transfer barcoded mRNAs from 'sender' to neighboring 'receiver' cells, so you can reconstruct cellular interactions with sequencing alone, no imaging required.
We coupled match-seq with CRISPR + scRNA-seq in cancer, revealing cancer-immune interaction neighborhoods at scale, and new cancer genes that can be targeted for tumor rejection via immune cell interactions.
Led by the brilliant @peterdu_ with Bassik lab!
biorxiv.org/content/10.64898…
Gerald Tiu retweeted
As usual, Zvi has the best take on the Navier-Stokes proof, Theres a lot of fog and confusion, but the real story here is that it didn’t even take OpenAI two weeks to train a model that’s a step change above Astra, at least when it comes to math capability.
Gerald Tiu retweeted
🧬🧪🔬Why are enhancers transcribed? How does it impact gene regulation? I’m excited to share our new paper in @ScienceMagazine showing that ncRNAs control the timing of gene activation in embryos. w/Mike Levine #ScienceResearch #RNA
A few highlights 🧵👇
science.org/doi/10.1126/scie…
We’re sharing a solution to the Navier-Stokes Millennium Prize Problem, one of the deepest problems at the frontier of mathematics.
The proof was produced by a group of agents, using an OpenAI next-generation model significantly more capable than GPT-6 Astra.
The problem concerns whether the description of smooth three-dimensional fluid motion modeled by the Navier-Stokes equations can break down. It has remained unresolved for roughly 90 years.
Gerald Tiu retweeted
Out now in @CellCellPress our approach for cellular-self reporting: live-cell transcriptomics with engineered virus-like particles in collab w/ @LindaGGriffith1 lab @MIT @broadinstitute cell.com/cell/fulltext/S0092…
Gerald Tiu retweeted
Very cool and natural direction for genetics. @KroganLab identified binders of 100 ASD genes and tested missense variants for their effects on protein-protein interactions. A diversity of mechanisms can emerge from this.
Very impressive.
science.org/doi/10.1126/scie…
Gerald Tiu retweeted
Excited to share my PhD work, now on @bioRxiv! 🎓🦠Viruses are packed with small ORFs with unknown function. At @JswLab w/ collaborators, we built a pan-viral microprotein atlas that uncovered the oncogenic activity of BNLF2b, an EBV gene linked to cancer.
biorxiv.org/content/10.64898…
Gerald Tiu retweeted
1/2 Garcia Lab preprints out now - "Functional Pairing of TCR-pMHC Interactomes by Single-cell Clonal Expansion" led by @LiuDaisyLiu. Super cool tech!
Gerald Tiu retweeted
Tackling a 60-year-old challenge in quantum chemistry: making density functional theory scale nearly linearly with system size.
This has huge implications for opening the door to realistic systems that have traditionally been too expensive to simulate.
AI has attempted to accelerate these calculations, but models generally struggle to extrapolate, particularly to systems larger than those seen during training. Unlike text or images, quantum-mechanical training data is extremely expensive to generate.
We present a single unified AI model that performs quantum-mechanical simulations of both molecules and materials in quasi-linear time.
Using a novel Fourier neural operator variant, we learn the underlying Kohn–Sham equation map to produce physics-informed, self-consistent answers.
Unlike prior AI approaches that directly predict chemical properties, our model works through intermediate steps to improve difficult predictions, resembling inference-time reasoning in large language models.
To demonstrate its scalability, we run a self-consistent calculation of a magnesium dislocation with about 80k electrons on a single GPU, which previously required about 7k GPUs.
tensorlab.cms.caltech.edu/us…
@DanishK42 @Caltech
Transcription Factors are central to cellular identity and function. The human genome currently contains ~1600 of them. But could there be productive human transcription factors that have not evolved? Out today in Cell, a tremendously talented graduate student Oliver Takacsi-Nagy @Oli_TN, together with the @Satpathology Lab, determined to find out. (1/10)
authors.elsevier.com/sd/arti…
Gerald Tiu retweeted
Human protein-coding genes evolved from old parts - reconfigured domains from ancestral genes. We can screen short-sequence evolution at scale using mutagenesis, CRISPR, etc, but we had no way to do the same for domain-level evolution.
Happy to share our work developing DESynR genes today in @CellCellPress: scalable synthesis and functional screening of thousands of new human genes, built from old parts. DESynR transcription factors outperform native factors and dramatically improve CAR T cell function.
A team effort led by the incredible Oliver Takacsi-Nagy! @parkerici @CancerResearch @TheMarkFdn
cell.com/cell/fulltext/S0092…
Gerald Tiu retweeted
Four years ago, a mystery case led Core Investigator @jvpluv to discover a new diagnosis (ABCD). Today his team published one of the largest clinical surveys of unexplained spinal cord disease to date in @JAMANeuro, finding ABCD in roughly half of patients.
Gerald Tiu retweeted
Protein editing using a coordinated transposition reaction | Science science.org/doi/10.1126/scie…
Gerald Tiu retweeted
Dyna-1 is now published in @Nature! Since this preprint thread 18 months ago, there's prospective experimental validation and more!
nature.com/articles/s41586-0…
Many congratulations to coauthors @ginaelnesr @DorotheeKern and the whole team!
Protein dynamics was the first research to enchant me >10yrs ago, but I left in PhD bc I couldnt find big expt data to evaluate models.
Today w @ginaelnesr, I'm thrilled to share the big dynamics data I've been dreaming of, and the mdl we trained: Dyna-1.
rb.gy/de5axp
Gerald Tiu retweeted
Today in @Nature we are excited to share the final version of Dyna-1 and *all* of the datasets we curated! New to the manuscript is prospective experimental validation. Congrats to @HWaymentSteele @DorotheeKern @sokrypton and team!!!
🔗nature.com/articles/s41586-0…
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