Environmental microbial ecology, antibiotic resistance & microbial adaptation. HGT are hot!
Copenhagen, Denmark
Joined May 2010
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Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes? sfamjournals.onlinelibrary.w…
Joseph Nesme retweeted
Out in final form: "Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning" in @iscb journal Bioinformatics academic.oup.com/bioinformat… (now fully open access)
Joseph Nesme retweeted
The role of plasmids in the gut microbiome during the first year of life biorxiv.org/cgi/content/shor… #biorxiv_micrbio
Joseph Nesme retweeted
Copenhagen - the PacBio Discoveries Roadshow is back. Come along and hear our customers sharing their latest breakthroughs, and network with leading scientists on your doorstep.
View full agenda: bit.ly/3lKfpbH
Joseph Nesme retweeted
For all Cyano lovers and/or those who have children (4-9yo) or a good connection with schools, here is the English version of Fila&Bubbee! We deliver it for free to schools and we also respond to children's questions by visioconference with schools.
Joseph Nesme retweeted
Very happy to see this work finally published! Many thanks to all authors, my lab mates and special thanks to @AlvSanMillan !
The full paper can be read here --> nature.com/articles/s41559-0…
If you want to know about it keep scrolling down! (1/5)
This Post is from an account that no longer exists. Learn more
Joseph Nesme retweeted
📣We have open PhD positions on the early life human gut microbiome & microbial interactions therein @microUCPH
🔥Exciting project on #metagenomics & #metabolomics
🤝 Great collaborators @COPSAC_com
✍️Application deadline: Nov 4, 2022
jobportal.ku.dk/phd/?show=15…
🙏Please retweet
our follow-up study on disposal of sewage biosolids: Influence of sewage sludge stabilization method on microbial community... sciencedirect.com/science/ar…
Joseph Nesme retweeted
Life comes at you fast: pundits on Russian TV realize that their military is failing and their country is in trouble. They are starting to play the blame game. Some of them finally understand that their genocidal denial of the Ukrainian identity isn't working in Russia's favor.
Joseph Nesme retweeted
Lettuce grown in soil with organic fertilization history had higher fitness in presence of pathogen Rh. solani compared to mineral fertilization yet showed growth/defense tradeoff. DiControl: @igz_leibniz @UniHohenheim @HSAnhalt @HelmholtzMunich @JKI_Bund @BonaRes4u @jnesme
Joseph Nesme retweeted
Why did one AMR plasmid disseminate globally and one die out? Find out inside this awesome work bit.ly/3oMRrup led by @MalakaDeS with @Jaws_Stenhouse @GraceBlackwell @RJBengtsson @ClaireJenkins2 @JPJHall 1/8
Joseph Nesme retweeted
New preprint out!
We know that plasmid spread depends on the specific bacterial host. But are initial phenotypes of strain-plasmid pairs or evolutionary changes in their plasmid-stability traits the more relevant predictor of plasmid spread? 1/3
Joseph Nesme retweeted
Latest #preprint at @PlantEvolution lab: we fully exploit pool-based amplicon sequencing with @PacBio long-reads to preserve the haplotype information of the targeted locus.
Lead by @Kersten_Sonja in collaboration with @agris42 @zevkronenberg @kjschmid
biorxiv.org/content/10.1101/…
Joseph Nesme retweeted
A fully funded PhD position is available in my lab:
- 3 years
- project: metabolic and regulatory drivers of metabolic cross-feeding interactions in microbial communities
- deadline: 28.07.22
- experience in LC-MS analyses and/or transcriptomics is a plus
uni-osnabrueck.de/universita…
Hej @koebenhavner! Why do I have to go through a paying service to get married in the kommune for which I pay the same taxes as everyone else?.. Why is my EU resident permit not enough to allow you to process the case but would be enough @familieretshus?..
Joseph Nesme retweeted
📣Only two weeks left to apply for this @HorizonEU funded POSTDOC position in our group! 🔬🧬 🦠
Come and join us @3d_omics!
Please share within your network - thanks! 🙏 (deadline 3rd April 2022)
employment.ku.dk/all-vacanci…
We are hiring a postdoc to join our team in Copenhagen! A great opportunity to combine high-resolution imaging and multi-omics in a collaborative/energetic EU-funded project @3d_omics. 🔬🧬
Please email if interested, and RT to spread the word 🙏
employment.ku.dk/all-vacanci…
Joseph Nesme retweeted
While recent advances in protein structure prediction have become supersonic, microbial ecologists are left in the dust as we continue to ignore structure, and focus purely on sequences. In this preprint of my PhD work we say no more! biorxiv.org/content/10.1101/…
Joseph Nesme retweeted
Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM dlvr.it/SL0bXr
OK ! OK! C'est bien reçu @inrae, j'espère que vous multipliez les postes comme les mails du coup :)
Joseph Nesme retweeted
The genetic and ecological landscape of plasmids in the human gut biorxiv.org/content/10.1101/…
