
postdoctoral fellow @martienssenlab @cshl
New York, USA
Joined September 2016
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The MaizeCODE paper is on BioRXiv! New insights on enhancers in plants and a lot of data for every maize (epi)geneticist to play with, including on teosinte, the ancestor of maize. A big team effort, very grateful to everyone involved!
biorxiv.org/content/10.1101/…
Jonathan Cahn retweeted
Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis @Nature from Tetsuji Kakutani & colleagues - beautiful insights into control of transposon insertion into the centromeres
nature.com/articles/s41586-0…
Jonathan Cahn retweeted
Ever wondered how transcription choreographs histone modifications? Our work reveals the basis of co-transcriptional H3K36me3 by SETD2. We visualize how a histone writer coordinates with the transcription machinery! This is the magnus opus of @MarkertJon tinyurl.com/setd2
Jonathan Cahn retweeted
Interested in chromatin and transcription in plants?🌱🧬 looking for a lab to do a postdoc? 🤓 our lab invites applicants for the following calls: #JuanDeLaCierva from @AgEInves tinyurl.com/y78ueh5v and #CIAPOS from @GVAeducacio tinyurl.com/bmrex8cc Interested, please PM!!
Jonathan Cahn retweeted
The Slotkin lab is hiring for an exciting project that involves gene editing, transposable elements and plant transformation! Please RT! paycomonline.net/v4/ats/web.…
Jonathan Cahn retweeted
My co-first author paper now out in @Nature
SWR1 specifically exchanges H2A/H2B dimers for Htz1/H2B dimers in nucleosomes. Here we show double dimer exchange can be processive, explaining how SWR1 ‘proofreads’ dimer identity in a nucleosome.
nature.com/articles/s41586-0…
Jonathan Cahn retweeted
It is my absolute pleasure to share my incredible postdoc Dawei's @amaizeingcorn manuscript on epigenetics and aging in Arabidopsis. It is the work I am most proud of thus far in my career, and every figure has a breakthrough that we are excited about
biorxiv.org/cgi/content/shor…
Jonathan Cahn retweeted
Looking to add statistical insights directly to your ggplot2 visualizations? The ggstatsplot package simplifies this by incorporating statistical tests, effect sizes, and other analyses right within your plots.
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The visualizations shown here are from the package website and demonstrate how ggstatsplot integrates statistical results seamlessly into ggplot2 graphics: github.com/IndrajeetPatil/gg…
Want to deepen your knowledge of ggplot2 and learn how to create informative visualizations? Join my online course, “Data Visualization in R Using ggplot2 & Friends,” starting on November 25, 2024!
Claim the early bird promotion before it closes on November 6.
Further details: statisticsglobe.com/online-c…
#DataVisualization #Statistical #programmer #VisualAnalytics #database
Jonathan Cahn retweeted
Have we been over-estimating the impact of m6A? Possibly! We present our evidence here @NewPhyt
nph.onlinelibrary.wiley.com/…
"mRNA ADENOSINE METHYLASE promotes drought tolerance through N6‐methyladenosine‐dependent and independent impacts on mRNA regulation in Arabidopsis"
Jonathan Cahn retweeted
The dual trxG/PcG protein ULTRAPETALA1 modulates H3K27me3 and directly enhances POLYCOMB REPRESSIVE COMPLEX 2 activity for ... biorxiv.org/cgi/content/shor… #biorxiv_genetic
Shelling season is like a box of chocolate.. and this is a particularly beautiful and genetically complex one!
Jonathan Cahn retweeted
Very proud to share our second pre-print of the year, this time on the positive crosstalk between DNA methylation and Polycomb-group proteins at Arabidopsis transposable elements (TEs):
biorxiv.org/content/10.1101/…
Jonathan Cahn retweeted
New preprint! An atlas of conserved TF binding sites across flowering plants generated with multiplexed DAP-seq. When integrated with multi-species snRNA- and snATAC-seq reveals how TF activity shapes development and stress responses at the cellular level.biorxiv.org/cgi/content/shor…
Jonathan Cahn retweeted
New Article: "An RdDM-independent function of Pol V transcripts in gene regulation and plant defence" rdcu.be/dVzZd
With News & Views: "RNA polymerase V: From RdDM to plant defence" rdcu.be/dVz0c
Jonathan Cahn retweeted
Now out in Nature Communications! With additional data documenting reduced DNA methylation associated with DNG targets in pollen - nature.com/articles/s41467-0…
New! Methylation-controlled gene regulation in maize pollen, led by Jonathan Gent (@corncolors group). Tldr: Two maize DNA glycosylases (DNGs, which demethylate DNA) redundantly enable high transcript levels of a small set (~50) of pollen-specific genes, biorxiv.org/content/10.1101/…
Jonathan Cahn retweeted
🚨 Excited to share this #preprint from my postdoc in the Lippman lab @CSHL, in collab. with @mike_schatz & many others! Using pan-genomics & pan-genetics across the Solanum genus 🍅🥔🍆 we reveal gene duplications 🧬 as contingencies in crop engineering. doi.org/10.1101/2024.09.10.6…
Jonathan Cahn retweeted
Fun outreach from our highland adaptation grant. A video game for primary school kids to learn about maize, evolution, and archaeology. play.google.com/store/apps/d…
Jonathan Cahn retweeted
Happy to announce that the PEpiTE lab is officially open since 2 weeks now at the Institute of Biology of @ENS_ULM in Paris! Studying all things related to Polyploidy, Epigenetics and TEs - feel free to get in touch for postdocs / PhD/ Master opportunities! @IBENS_ENS @psl_univ
Jonathan Cahn retweeted
How TEs gain and lose between tropical and temperate maize inbreds? We found that tropical corns have 35Mb more TEs than temperates, and it's mainly due to a small number of LTR families that are young, less methylated, and more expressed in tropical maize.pubmed.ncbi.nlm.nih.gov/3925…
























