PhD student @RenardLab @HPI_DE | Working on interpretable ML and bioinformatics
Berlin, Deutschland
Joined September 2017
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Marta Lemanczyk retweeted
Our collaborator Alexander Rakowski presented „Metadata-guided Feature Disentanglement for Functional Genomics“ @ECCBinfo #ECCB2024
Check out the proceedings paper: academic.oup.com/bioinformat… – at Turku, Finland
Marta Lemanczyk retweeted
Conference season has truly started for us! ✨
Here are our presenters from @ECMLPKDD in Vilnius, Lithuania catching up with presenters on the way to @ECCBinfo in Turku, Finland 🚀
ALT Many smiling faces at a dinner table in Vilnius, Lithuania. From left: Ferdous Nasri, Marta Lemanczyk, Simon Witzke, Sebastian Schmidl, Paulo Yanez, Eshant English, and Yannick Hartmaring.
Marta Lemanczyk retweeted
Do current genomic language models (pre-trained on whole genomes) learn a foundational understanding of biology in the non-coding region of human genomes?
A new evaluation led by @AmberZqt suggests not yet!
1/N
paper: biorxiv.org/content/10.1101/…
Marta Lemanczyk retweeted
We had a blast welcoming so many of our alumni and friends to DACS&Friends (Data Analytics and Computational Statistics & Future Research Ideas and ENDeavours Symposium) a few weeks back.
Thank you so much to all the dear speakers and attendees for making the event so special!✨
ALT Group photo of the attendees of the DACS&Friends symposium at HPI
Marta Lemanczyk retweeted
Join us 2mrw @⚡️XAI-in-Action : Past, Present & Future Applications⚡️ workshop @NeurIPSConf for an exciting discussion on how far we've come, the current state & future of XAI !
Bonus: Live Demos!
Submit ur ❤️🔥 panel questions: app.sli.do/event/6e2A95V26gs…
🔗xai-in-action.github.io/
Marta Lemanczyk retweeted
Announcing our Neurips 2023 workshop "XAI in Action: Past, Present, and Future Applications"!
xai-in-action.github.io/
Apart from the usual submissions, we have a special "demo" track to demo s/w libraries, visualization tools, applications of ML w major XAI component
Ddl :22 Sept
You are back from ICML, submitted your rebuttal to NeurIPS and wondering what to do next? Submit your work to the NeurIPS AXAI workshop
xai-in-action.github.io
Marta Lemanczyk retweeted
...aand it's a wrap again! See you next time in Turku 🇫🇮 or Montreal 🇨🇦! #ISMBECCB2023 🦊
Marta Lemanczyk retweeted
Are you still using Kraken or Centrifuge for long-read taxonomic classification? Or are you using large Bloom Filters for biological data analysis? If the answer is yes, you should attend the talk from Jens-Uwe Ulrich at 2:10 p.m. in the Lumière Auditorium #ISMBECCB2023 #HiTSeq23
Stop by, happy to chat! 😊🦊
Find @m_lemanczyk today at 6pm at the lucky number A-333 where she presents her poster on „The influence of negative data on model training and interpretability for genomic data containing motif interactions“
#ISMBECCB2023
Today #ISMBECCB2023 started in Lyon and the @RenardLab is here with some exciting talks and posters! Stay tuned 🥖
Marta Lemanczyk retweeted
We are looking for a postdoc with a strong backbround in bioinformatics and/or machine learning to join our lab! Contact me if you are interested.. or retweet.. or just come and talk to me #ISMBECCB2023 next week in Lyon! I will be at the iRNA COSI 26-27 July
Marta Lemanczyk retweeted
Excited to share new work with @ToneyanSh!
CREME (Cis-Regulatory Element Model Explanations), a suite of in silico perturbation experiments to uncover the rules of gene regulation learned by large-scale DNNs trained on functional genomics data. biorxiv.org/content/10.1101/…
Marta Lemanczyk retweeted
Heute Besuch am Hasso Plattner Institut @HPI_DE. Gute Nachricht: Hier werden weltweit erstklassige KI Modelle in der Medizin entwickelt. Schlechte Nachricht: fast nur mit ausländischen Daten, da die Deutschen Daten nicht vorliegen. Das werden wir ändern.
Marta Lemanczyk retweeted
Good morning at day 3 in Valencia for #ViBioM2023! Keynote speaker Bernhard Renard @RenardLab is getting us into the #machinelearning mood to talk about viral #surveillance in the first session. Glad to see so many people up after the great conference dinner!
Marta Lemanczyk retweeted
I had a great time talking about "Enforcing Right to Explanation: Technical Challenges, Solutions, and Opportunities" at the Responsible AI workshop at @CarnegieMellon University.
Slides: tinyurl.com/dtbpemv3
Key takeaways summarized👇. More details in the thread👇 [1/N]
Very excited about our tomorrow's panel and presentations about Responsible AI at CMU with @hima_lakkaraju, @HodaHeidari, @BasicScienceSav, @steinly0, and Ahmad Tafti. Register *now* to join our 500+ (!) online participants!
sites.google.com/view/rainsc…
…including the poster of my colleague @ferbsx who is presenting at #ICLR23 about „Immunity score calibration based on vaccination rebalancing“ 👩🏻🏫💪 @RenardLab
Papers at the first ever Machine Learning & Global Health workshop #ICLR23 are here: openreview.net/group?id=ICLR…
Marta Lemanczyk retweeted
📢 Are you on the job market this year or looking for new opportunities, whether full-time, internships, postdocs, etc? We would love to promote your work.
Write a tweet describing your work and tag us (@trustworthy_ml), and we will retweet you! :)
Marta Lemanczyk retweeted
🎉Check out our new paper on #secondary #data for #globalhealth published this week @LancetDigitalH! @HPI_DE @ChariteBerlin @_KSU @WHO @Uni_MR @BIPS_Bremen @UniBremen @LMU_Muenchen @unierfurt @unipotsdam @FU_Berlin @rki_de
Marta Lemanczyk retweeted
🌳Do you have #hierarchical data that you want to classify? Try out the hierarchical algorithms and metrics implemented in our Python library, #HiClass! Now available @JmlrOrg! @mirand863 & Niklas Köhnecke
jmlr.org/papers/v24/21-1518.…
Marta Lemanczyk retweeted
Contamination detection and microbiome exploration with GRIMER. #Microbiome #ContaminationDetection #InteractiveAnalysis @biorxivpreprint biorxiv.org/content/10.1101/…
