@maralampert

Communicative mind between biology and computer science. https://xitter.cf/t.co/POCWvnPqZC / uni leipzig CMS master student tu dresden #bioimageanalysis

 Dresden, Sachsen
github.com/marabuuu
Joined January 2022
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  • Following200
  • Followers134
15Media
If you want to find out more about Bio-image Analysis in @napari_imaging, you can check out my blog series on @focalplane_jcs containing how-to guides for common methods and challenges (e.g. citation). 🔬🚀focalplane.biologists.com/ca… Happy reading and coding! 😇

Bio-image Analysis with Napari - FocalPlane

How to guides for common bioimage analysis methods. Author: Mara Lampert

focalplane.biologists.com
Robert Haase@haesleinhuepf21 Jun 2024
Replying to @seledevedec @NEUBIAS_
I recommend this @focalplane_jcs blog post about 3D annotations with @napari_imaging written by @maralampert. It comes with video tutorials and detailed explanations 🔬🖥️✍️🤩 focalplane.biologists.com/20…
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Lea Kabjesz, Lea Gihlein, @maralampert, and Luisa Götze led a workshop at the @Sca_DS General Assembly. Titled “Coding Effectively with AI: Getting Started with Cursor and Copilot”, the slides are free and suitable for beginners. 👉 zenodo.org/records/17093197 #PromptLikeAPro
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Ensuring reproducibility in GUI-based bio-image analysis tools can be tricky. In her blogpost, @maralampert highlights features in Napari, Fiji, QuPath, Galaxy, CellProfiler and JIPipe that support workflow saving and sharing. focalplane.biologists.com/20…
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In their Perspective article, @VirginieUhlmann, Matthew Hartley, @notjustmoore, Erin Weisbart and @AssafZaritsky tell us how we can make the most out bioimage data through interdisciplinary interactions. journals.biologists.com/jcs/… #JCSImagingSI
Cartoon of two squirrels breaking into a nut. One squirrel has a collection of walnuts and is ‘describing’ the nut within the nutshell, while holding up a nut from a nearby broken shell. The other squirrel presents an equation showing that they get the nut by hitting the nutshell with a hammer, while hitting and breaking one of the nutshells with a hammer. The cartoon was drawn by Henning Falk.

ALT Cartoon of two squirrels breaking into a nut. One squirrel has a collection of walnuts and is ‘describing’ the nut within the nutshell, while holding up a nut from a nearby broken shell. The other squirrel presents an equation showing that they get the nut by hitting the nutshell with a hammer, while hitting and breaking one of the nutshells with a hammer. The cartoon was drawn by Henning Falk.

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📅 REMINDER: Make sure to attend the inaugural lecture "From Pixels to Patterns: Machine Learning for Bioimage Analysis" of Prof. Martin Weigert at TU Dresden. It will be well worth it! ▶️ Tuesday, 26.11.2024, 4:40 p.m. ▶️ APB-E023, Nöthnitzer Str. 46, 01187 #Dresden
ScaDS.AI Dresden/Leipzig@Sca_DS9 Nov 2024
📅 On 26.11.2024 at 4:40 p.m., we invite you to the inaugural lecture "From Pixels to Patterns: #MachineLearning for Bioimage Analysis" of Prof. Martin Weigert. He is professor for Machine Learning for Spatial Understanding at @tudresden_de & @Sca_DS. 👉 scads.ai/calendar/inaugural-…

Inaugural Lecture of Prof. Martin Weigert - ScaDS.AI

ListenFrom Pixels to Patterns: Machine Learning for Bioimage Analysis In recent years, machine learning has […]

scads.ai
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Du interessierst dich für die #Methoden der Human- und Lebenswissenschaften? Du möchtest nicht nur theoretisch darüber lernen, sondern praktisch anpacken, um in den Kern der #wissenschaftlichenMethode einzutauchen? Anmeldung: amenable-vacation-ba7.notion…. ✒️
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A little bit into the python API weeds but here is a 2 part video on how to deal with a tough multiscale segmentation problem with Cellpose: part 1 youtube.com/watch?v=hF9dT3rw… and part 2 youtube.com/watch?v=UIoXg5S4…
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Happy to share a new review article led by Laura @zigutyte from @Katherlab. We surveyed all contributions at Europe’s largest conference on hepatology, @EASLnews 2024. The liver research field is already integrating AI techniques for diagnostics, evaluating treatment effectiveness, assessing risks, and more. buff.ly/40J3DAi
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📢The #YMIA present: Streamlining 3D image analysis with #OMERO by @tom_bssnnt. Tomorrow, November 13th! Efficient data management meets powerful #ImageAnalysis for seamless research. 💻🚀 Register here: gerbi-gmb.de/machform/view.p…
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Our Training Coordinator @haesleinhuepf attended the workshop of the Global BioImage Analysis Society @GloBIAS_ last week and spoke about "Training Computational Skills in the Age of AI" and "Developing a Training Strategy". 👉zenodo.org/records/14043615 👉zenodo.org/records/14053758
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Liebe Wissenschaftsbegeisterte, kommt zum Semester #KickOffMeeting des #StudentNetworkforOpenScience am 27. Oktober oder am 03. November 2024 um 16:00 Uhr online auf MS Teams und werdet dieses Semester aktiv! 💡 📍 Link: tinyurl.com/NOSkickoff
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Mara Lampert retweeted
Gabriel
@gabelbling26 Oct 2024
Amazing graphical representation of a neural net, never seen anything like it.
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Very happy to share the first article from my postdoc work in the Tomancak lab! biorxiv.org/content/10.1101/…. We studied the self-organization of actin in aggregates made from Hydra cells. Thread below (1/9)
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New from me and a huge cast of amazing bioimage analysts in @J_Cell_Sci - - "The crucial role of bioimage analysts in scientific research and publication" journals.biologists.com/jcs/… . Hop into 🧵to learn more! (1/x)

The crucial role of bioimage analysts in scientific research and publication

Summary: We examine the importance of bioimage analysis, obstacles to wider adoption of these important methods and ways to ensure that bioimage analysts receive the career support they need.

journals.biologists.com
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I just updated the #gitbob #preprint: It now comes with a graphical abstract outlining how multiple humans can interact with multiple LLMs in a persistent discussion thread about #DataAnalysis tasks. 😎zenodo.org/records/14019030
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Gene expression patterns in a drain fly embryo | 2024 Photomicrography Competition | Nikon’s Small World: @bruvellu did it again! @mpicbg @NikonSmallWorld #LoPaTs nikonsmallworld.com/gallerie… – at Dresden, Germany

Gene expression patterns in a drain fly embryo | 2024 Photomicrography Competition

Bruno Vellutini - Gene expression patterns in a drain fly embryo (Clogmia albipunctata) with an open eggshell

nikonsmallworld.com
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🌟@Sca_DS is currently part of the #MakerDaysforKids in Leipzig and in charge of an AI workshop where kids learn how to generate images, music and texts using #AI. One Highlight is a #SmartMirror: Interact with your reflection & discuss AI's impact on self-image & society. #STEM
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Let me introduce you to the amazing @nfdi4bioimage crew @Sca_DS.AI taking care of #BioImageAnalysis, #ResearchDataManagement and #ArtificialIntelligence Training 🔬💻👨‍🏫🚀 #NewGroupPicture
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🚨 #preprint alert 🚨 "Towards Transparency and Knowledge Exchange in AI-assisted Data Analysis Code Generation": Using direct LLM-integration in discussions about Github issues and pull-requests, a.k.a. #gitbob. Let me guide you through it in a short 🧵 zenodo.org/records/13928832
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#gitbob 0.3.1 is out and as an experiment, I'm opening it for #BioImageAnalysis support requests to the public. 🫵 Let's guide the #AIassistant together to analyse your image. 😃 github.com/haesleinhuepf/git… How it works 🧵: 1. Upload an image and ask an initial question:
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Our lab's first preprint!!! Could not be prouder 😀 fantastic work of master (yes Master!) student Jannik Rothkegel, liaising with our superb team @SylviaK_DD and Michaela Wilsch-Brauninger!
bioRxiv Biophysics@biorxiv_biophys20 Sep 2024
The Role of Purine Interactions in Biogenic Crystal Shape Determination biorxiv.org/cgi/content/shor… #biorxiv_biophys
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