@nmensah5

🇬🇧🇬🇭👨🏾‍💻 Tagomics. Alumin @vanloolab, @TheCrick, @NSHCS STP.

 Cambridge, England
linkedin.com/in/nana-mensah
Joined March 2018
  • Tweets341
  • Following1.4K
  • Followers341
Genomic tests don't always find a diagnosis for rare disease patients, but what if we look again? Our paper in @GIMJournal describes a #bioinformatics tool that can help #NHS labs to reanalyse genomic variants using the dynamic @PanelAppTeam database 🧬: sciencedirect.com/science/ar…
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Alastair Lamb@LambAlastair29 Jan 2025
•Are you a data scientist / bioinformatician / computational biologist? •Are you interested in #SpatialGenomics? •Do you want to apply your skills to big questions in #ProstateCancer? Apply here!! 👇 (closing date 12th Feb) qmul-jobs.tal.net/vx/mobile-… #SPACE_Study #Organscale
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Beyond excited to share our work on the reciprocal interaction between metastatic cancer cells and AT2 cells now published @Dev_Cell ! 🧵 [1/15] cell.com/developmental-cell/…

Bidirectional activation of stem-like programs between metastatic cancer and alveolar type 2 cells...

Rodrigues et al. utilize an in vivo labeling system (Cherry-niche) to explore early processes occurring in the lung during metastatic outgrowth. The findings show a reciprocal interaction between...

cell.com
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Franco Izzo
@FrancoIzzo858 May 2024
GoT-ChA! I am thrilled to announce that our paper "Mapping Genotypes to Chromatin Accessibility Profiles in Single Cells" is now out in @Nature !! 👩‍🔬👨‍🔬🧬If you want to link somatic mutations to epigenetic changes directly in patient samples: nature.com/articles/s41586-0… 👇🧵
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Important reasons why negative results and failed experiments should be reported in the #scientific literature. Reporting by @RachelBBrazil. Illuminating ‘the ugly side of science’: fresh incentives for reporting negative results nature.com/articles/d41586-0…

Illuminating ‘the ugly side of science’: fresh incentives for reporting negative results

Nature - New data repositories and alternative journals and workshops offer routes for sharing negative results — which could help to solve the reproducibility crisis and give machine learning a...

nature.com
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We will be looking for new group leaders, with focus on (AI) methods, and especially young scientists. We evaluate by potential not just your current track record - great place to start a lab (speaking from experience!) - contact if interested, & please RT
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Kamal Nahas@KLNahas20 Mar 2024
Generative AI can craft impressively eloquent text, but is it ready to mass produce lay summaries of research articles? Though it may be on the right track, there are still some drawbacks to watch out for. New from me in @NatureIndex nature.com/articles/d41586-0…

Is AI ready to mass-produce lay summaries of research articles?

Nature - A surge in tools that generate text is allowing research papers to be summarized for a broad audience, and in any language. But scientists caution that major challenges remain.

nature.com
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Had a great time presenting the components of project MAIRA (aka.ms/maira) at @TheCrick's AI club. Thanks @sea_shunned and @nmensah5 for inviting me to the #CrickAIClub! (credit to @_hylandSL for the slide on the left and many more)

Project MAIRA - Microsoft Research

Multimodal AI for Radiology Applications Note: This research has reached its conclusion, and this page is for historical reference and archival purposes only. Project MAIRA is a research project from...

microsoft.com
CrickAIClub@CrickAIClub15 Mar 2024
.@fepegar_ presenting at #CrickAIClub about the amazing Multimodal AI work being done at @MSFTResearch for Improving Radiology Workflows Find out more at microsoft.com/en-us/research… @TheCrick #MedicalIA #MedicalImageAnalysis #ImageAnalysis #RADDINO #MultimodalAI
Researcher standing in front of a large screen, with a slide titled "Large multimodal models?" and examples of large language model outputs

ALT Researcher standing in front of a large screen, with a slide titled "Large multimodal models?" and examples of large language model outputs

Researcher standing in front of a large screen, with a slide titled "RAD-DINO Exploring scalable medical image encoders beyond text supervision"

ALT Researcher standing in front of a large screen, with a slide titled "RAD-DINO Exploring scalable medical image encoders beyond text supervision"

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Nature Cancer@NatureCancer31 Jan 2024
NEW REVIEW ARTICLE @NatureCancer – “Aneuploidy and complex genomic rearrangements in cancer evolution” by @VanLooLab #TobyMBaker #SaraWaise #MaximeTarabichi. Read it here👇 nature.com/articles/s43018-0… rdcu.be/dxoLb
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Michael Hubank@generoom29 Feb 2024
This great article from @markowetzlab sets out why almost all models fail to be translated into the clinic and suggest solutions. The same arguments apply to all clinical #genomic tests and associated #bioinformatics. A thread on my own experiences. nature.com/articles/s41698-0…

All models are wrong and yours are useless: making clinical prediction models impactful for patients

npj Precision Oncology - All models are wrong and yours are useless: making clinical prediction models impactful for patients

nature.com
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Great application of DNA language models to prokaryotic genomes. Excellent impactful application use cases of the model. Congrats to all the authors! But a quick answer to the first question. No - DNA is not all you need. 1/
Patrick Hsu
@pdhsu27 Feb 2024
Is DNA all you need? In new work, we report Evo, a genomic foundation model that learns across the fundamental languages of biology: DNA, RNA, and proteins. Evo is capable of both prediction tasks and generative design, from molecular to whole genome scale.
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Rafael Irizarry@rafalab4 Jan 2024
📣A second edition of our Introduction to #DataScience is on its way, now split into two books. After teaching the course this semester, we've made significant improvements. Current drafts are online: 📘Intro: rafalab.dfci.harvard.edu/dsb… 📙Advanced: rafalab.dfci.harvard.edu/dsb… #rstats
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Starting the #EMBLCanGen in @embl Heidelberg 🇩🇪! @nlbigas gives us an introduction ahead of @RFitzgerald_lab's talk on cancer evolution – at Heidelberg, Germany
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AlphaMissense, a tool by DeepMind, can help researchers learn more about the effects that missense mutations have on disease, and could help identify previously unknown disease-causing genes, according to a new Science study. Learn more: scim.ag/49l
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Rafael Irizarry@rafalab10 Jul 2023
Clustering algorithms report clusters even when none exist. In single-cell RNA-Seq pipelines, novel cell types are often identified by clustering algorithms. Expanding on Kimes et al.'s work, we introduce significance analysis for single-cell RNA-Seq data: nature.com/articles/s41592-0…
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25 April marks the 70th anniversary of the discovery of the structure of DNA. In the run-up to the anniversary, we’re exploring how some of the science related to the discovery has evolved since then. Today we’re taking a quick look at DNA replication with @DiffleyLab #DNADay23
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Today our important study on air pollutants in the promotion of lung cancer has been published in @Nature led by @WillHilliam @LimEmilia @DrClareWeeden @SwantonLab ...Thread below🧵nature.com/articles/s41586-0…
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Have you heard of Link23? It’s an exciting new initiative dedicated to making genomic tools that work for everyone: link23.world/. Tomorrow is the official launch (29 March, 2pm BST) - don’t miss it! ow.ly/IMJk50Npp9M
Genomics England@GenomicsEngland23 Mar 2023
T-minus 6 days to the public launch of the new global initiative, link23 🚀 link23 focuses on practical solutions to increase equity in genomics by making tools that work for everyone. Join us for the virtual launch on 29 March at 2pm - ow.ly/IMJk50Npp9M @Maxi_Macki
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Ji-Eun Park@_JiEun_Park_14 Feb 2023
Excited to share this work, collab with @mikelove et al!! Diffsig can test the association btwn mutational signatures and “risk factors” which can be any variables of interest – continuous or categorical – and multiple risk factors can be tested at once: biorxiv.org/content/10.1101/…
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Tulio de Oliveira
@Tuliodna12 Feb 2023
After years of constructions & one of the biggest investment in scientific infrastructure in SA (ZAR 1.5 billion), we finally open the largest genomics facility in Africa! Together with collaborators, we will advance genomics in Africa to the next level! #Science #Africa
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biomodal@biomodalhq6 Feb 2023
We are thrilled that our new paper has been published by @Nature. In it, we explain how our novel pre-sequencing workflow and analysis software enables the ability to interrogate genetics and DNA #epigenetics in a single workflow Read the full paper 👉 nature.com/articles/s41587-0…
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