@proteomicsdb
proteomicsdb.org
Joined July 2014
  • Tweets58
  • Following85
  • Followers468
2Media
We are very happy to announce that our latest story was published in @ScienceMagazine yesterday! πŸ₯³πŸŽ‰ science.org/doi/10.1126/scie… (1/6)

Decrypting drug actions and protein modifications by dose- and time-resolved proteomics

Dose-dependent effects of drugs on post-translational modifications reveal insights into their actions.

science.org
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New technology advance - parallel single cell transcriptomics and proteomics analysis using nanodroplet splitting. And I am certainly delighted to see that "All proteomic data raw files were processed by FragPipe" (with quant using IonQuant MBR option).
YingZhu@NanoPOTS_SCP18 May 2022
As single cell proteomics person, we always try to compare protein measurements to transcript, what if we can do both on the same cells? Great job by @cajun_science and collaboration between @EMSLscience and @Cellenion biorxiv.org/content/10.1101/…

Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet...

Single-cell multiomics can provide comprehensive insights into gene regulatory networks, cellular diversity, and temporal dynamics. While tools for co-profiling the single-cell genome, transcriptome,...

biorxiv.org
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ProteomicsDB retweeted
Henry@Henrywebel26 Mar 2022
Thanks for attending the @EuBIC_ms Winterschool 2022 (in spring this year)! Many thanks to keynote speakers, workshop organizers and active participants:) In case you forgot, a picture to keep you remember one important question:
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ProteomicsDB retweeted
MSAID
@msaid_de30 Oct 2021
Would you like your name as a peptide MS2 spectrum? For everyone joining #ASMS2021 online we are happy to send it to you. Request one here: forms.gle/A9EW5XrKikvwN4Sk6 Everyone attending in-person, please visit us at booth #301 and we print you your spectrum on the spot!
Siegfried Gessulat@sgessulat29 Oct 2021
#ASMS2021 Would you like your name as a predicted spectrum? Visit us at the @msaid_de booth - entrance right side. Would love to print you one! [O==M(ox)]
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ProteomicsDB retweeted
MS Lee Lab@msleemslab8 Mar 2021
Open positions for #PostDoc and #PhDstudents in clinical #proteomics at Technical University of Munich #TUM #Germany #Munich #Freising We are looking for the group members from May 2021. See more on our website and join us! mspec-sysns.de

Young Investigator Group: Lee Lab

Young Investigator Group founded by BMBF. The group is about applying mass spectrometry in systems neurosciences. And it is led by Chien-Yun Lee at the Technical University of Munich

mspec-sysns.de
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The lecture on non-ignorable missing data for π‘Ίπ’•π’‚π’•π’Šπ’”π’•π’Šπ’„π’” 𝒇𝒐𝒓 π’‘π’“π’π’•π’†π’π’Žπ’Šπ’„π’” is up slavovlab.net/stats Thanks to Professor Franks (@afranks53) for introducing the subject!
Non-Ignorable missing data

ALT Non-Ignorable missing data

Prof. Nikolai Slavov
@slavov_n23 Nov 2020
We will teach a YouTube course: π‘Ίπ’•π’‚π’•π’Šπ’”π’•π’Šπ’„π’” 𝒇𝒐𝒓 π’‘π’“π’π’•π’†π’π’Žπ’Šπ’„π’” Β - Each lecture will introduce one topic in 5-10 min max. Β - Example topics are listed below. Please suggest additional topics you would like to learn about as comments. slavovlab.net/teaching/Stati…
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Our main developer of @proteomicsdb defended his PhD successfully. Due to corona we have to celebrate on a minimal level. If you use @proteomicsdb, think of him and sent some greetings :)
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In case you didn't know, here is an amazing free @proteomicsdb resource (Klaeger et al., 2017), which *quantifies* cellular targets/off-targets (critical) for all those kinase inhibitors you're using in cells: If you're not using it, why not? (please RT): proteomicsdb.org
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Want to explore the global, steady-state proteomics and phosphoproteomics data for 125 cell lines? We`ve got you covered with our latest Nature Communication publication nature.com/articles/s41467-0… and/or our shiny web application atlantic.proteomics.wzw.tum.…
Want to explore the global, steady-state proteomics and phosphoproteomics data for 125 cell lines? We`ve got you covered with our latest Nature Communication publication https://www.nature.com/articles/s41467-020-17336-9 and/or our shiny web application http://atlantic.proteomics.wzw.tum.de/

ALT Want to explore the global, steady-state proteomics and phosphoproteomics data for 125 cell lines? We`ve got you covered with our latest Nature Communication publication https://www.nature.com/articles/s41467-020-17336-9 and/or our shiny web application http://atlantic.proteomics.wzw.tum.de/

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One of our computing nodes needs attention and Prosit will be in maintenance mode (no uploads). All jobs that were submitted and not yet processed will be processed tomorrow. @SkylineUW integration is unaffected as we are redirecting all requests to a different GPU
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Just published from @kusterlab: Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing #COVID19 mcponline.org/content/early/…
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The Meltome Atlas compiles the thermal stability of 48,000 proteins across 13 species ranging from archaea to humans, providing a resource for analyzing protein stability in the context of function and interactions. @kusterlab @savitski_lab nature.com/articles/s41592-0…
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Hi all, as you know we have been trying to create a representation for the experimental design. github.com/bigbio/proteomics… We have managed to curate 23 datasets from PRIDE and the file format and data structure look really stable now.
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It all comes down to this! #JBCMethodsMadness CHAMPIONSHIP VOTE: #TeamMassSpec vs. #TeamCryo – Which method should be crowned champion?
49%Mass Spectrometry
51%Cryo–EM/ET
4,076 votes β€’ Final results
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The queue for the prediction tool Prosit on @ProteomicsDB had a hiccup. No jobs were lost and we solved the issue. Your job will be done soon.
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ProteomicsDB retweeted
EMBL@embl16 Mar 2020
All EMBL sites will be closed from 19 March. We're keeping essential services running, which includes our global #coronavirus data resources. More detailed information will be available on our websites soon.
Grey and red background with the text: EMBL Site Closures and an exclamation point!

ALT Grey and red background with the text: EMBL Site Closures and an exclamation point!

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The Arabidopsis-Atlas is out in the wild! Check: nature.com/articles/s41586-0… and proteomicsdb.org! Great piece of work from Julia Mergner et. al! #arabidopsis #SFB #proteomics #transcriptomics #phospho
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ProteomicsDB retweeted
UniProt@uniprot8 Feb 2020
Replying to @mudstonephoto @ViralZone
Protein sequences, sequence feature predictions, function etc all now available as @UniProt prerelease. Learn more about the data insideuniprot.blogspot.com/2… and download the data via ftp://ftp.uniprot.org/pub/databases/uniprot/pre_release/
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you have this weird sample in the back of your closet to get a new angle rescore it with Prosit proteomicsdb.org/prosit/ #proteomics
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Just 6 days left to submit your oral or poster abstract for #ASMS2020! Deadline is Monday, February 3. After Feb. 3 there is no other opportunity to submit. Details here ow.ly/hiUi50y7oEA
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