@rOpenSci

rOpenSci fosters a culture that values open and reproducible research using shared data and reusable software

 Berkeley, CA
ropensci.org
Joined July 2011
  • Tweets5.5K
  • Following464
  • Followers31K
610Media
Quick technote about new cran.dev shortlinks: ropensci.org/blog/2023/07/26…
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Thanks @ropensci for highlighting the @PEcAnProject in your June 2023 News Digest. And thanks also for hosting the PEcAn R packages on R Universe. We'd particularly encourage folks interested in terrestrial ecosystem modeling to take a look! ropensci.org/blog/2023/06/22…

rOpenSci News Digest, June 2023

Statistical software review, next community calls, R-universe stars PEcAn project, R-universe snapshots, coworking

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Hello hello! #LatinR2023 in person is coming up in Montevideo and we want to tell you about the modalities of work that you can present. The deadline for receiving proposals is June 16.
Broadcast post with the LatinR logo and the text "Montevideo Uruguay, Universidad de la República. October 18-20, 2023, www.latin-r.com". Call for papers. Abstract submission start: May 20, 2023. Abstract submission deadline: June 16, 2023. Abstract submission acceptance: August 2023.

ALT Broadcast post with the LatinR logo and the text "Montevideo Uruguay, Universidad de la República. October 18-20, 2023, www.latin-r.com". Call for papers. Abstract submission start: May 20, 2023. Abstract submission deadline: June 16, 2023. Abstract submission acceptance: August 2023.

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rOpenSci retweeted
NumFOCUS
@NumFOCUS31 May 2023
Some exciting news from @rOpenSci - they will give their first talk in Japanese and it's coming up soon!! 🇯🇵👏 Joel Nitta will deliver a talk introducing rOpenSci at the Bio"Pack"athon on June 14: ropensci.org/events/2023-06-…. Be sure to mark your calendars to check this out!

rOpenSciの紹介

rOpenSciの紹介. Hosted by BioPackathon

ropensci.org
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千葉大学のニッタジョエル先生のrOpenSciプロジェクトについての発表資料です。
rOpenSci@rOpenSci31 May 2023
🗓️ Save the date! 💬 This June 14, Joel Nitta @joel_nitta will be giving a talk about rOpenSci at Bio”Pack”athon, a community of practice for scientific software based in Japan. Slides: joelnitta.github.io/biopak-r… More info: sites.google.com/view/biopac…
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New technote on the blog: Downloading snapshots and creating stable R packages repositories using r-universe ropensci.org/blog/2023/05/31…
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Even if I don't win the @MOOD_H2020 #MOOD_H2020 hackathon, my takeaway is how useful @rOpenSci #targets #rpackage docs.ropensci.org/targets/ is for reproducible workflows and how powerful #mlr3 mlr3.mlr-org.com/ framework is for spatial machine learning with spatiotemporal cv
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Added a new API on R-universe to download a full snapshot of a CRAN-like repo + docs (to mirror somewhere or just to archive). For example: ggseg.r-universe.dev/snapsho…
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Maëlle Salmon, Software Engineer, part-time with @rOpenSci, shares about the online book, HTTP Testing in R, co-authored with Scott Chamberlain. The HTTP book is a central place reference for developers of R packages accessing web resources. #Rstats ➡️ r-consortium.org/blog/2023/0…
There is a photo of Maëlle Salmon on the right side. On the left side there is text which reads "HTTP Testing in R Book". ISC Funded Project

ALT There is a photo of Maëlle Salmon on the right side. On the left side there is text which reads "HTTP Testing in R Book". ISC Funded Project

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I always wanted to make a R package with data and model derived from my master’s dissertation. So, I saw in the rOpenSci Champions Program the opportunity to make that wish come true. @BeaMilz, @yabellini and @UrbanDemog: thank you in advance for guiding me in this process!
rOpenSci@rOpenSci9 May 2023
✍️ [Blog post] New rOpenSci Champions Program Teams highlight. Today, meet @hsvab and @beatrizmilz, and learn about the project they are working on: 📌 ropensci.org/blog/2023/05/09… #RStats #RLadies

rOpenSci Champions Program Teams: Meet Haydée Svab and Beatriz Milz

Introducing Champions and Mentors - Haydée Svab and Beatriz Milz

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Code from the video: github.com/wlandau/targets-f… Try it out in a web browser: rstudio.cloud/project/394630…
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Get started with @rOpenSci #rstats {targets} in 4 minutes: vimeo.com/700982360 1. Write functions. 2. Call use_targets(). (version >= 0.12.0) 3. Follow the comments in _targets.R. 4. tar_manifest(), tar_visnetwork(), tar_make(), and tar_read()

Get started with {targets} in 4 minutes

{targets} R package >= 0.12.0: https://docs.ropensci.org/targets/ Example code: https://github.com/wlandau/targets-four-minutes Try it out: https://rstudio.cloud/project/3946303 Walkthrough: https:...

vimeo.com
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📣 Abstract submission is open for #EuroBioC2023 conference in Ghent 🇧🇪 Sep 20-22 eurobioc2023.bioconductor.or… ! Submit an abstract by April 14 for Short talk Software demo Poster Contributed session BOF session 👉 Submit here openreview.net/group?id=bioc… #rstats #Bioinformatics
A screenshot of the EuroBioc2023 website showing the conference dates and hex sticker.

ALT A screenshot of the EuroBioc2023 website showing the conference dates and hex sticker.

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predictNMB is now part of rOpenSci! This is the first R📦I've submitted to rOpenSci and I had a great experience with the peer review process and improvements made to the software. Check out the (fancy new) website for the package: docs.ropensci.org/predictNMB
rOpenSci@rOpenSci3 Apr 2023
rOpenSci is proud to welcome a new package to our software suite!🎉 predictNMB: Evaluate Clinical Prediction Models by Net Monetary Benefit by @RexParsons8 Docs: docs.ropensci.org/predictNMB Peer review: github.com/ropensci/software… #RStats (1/2)
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Replying to @rOpenSci
Thank you so much, @statsgen, Adam Sparks, Tinula Kariyawasam and @rOpenSci for the fantastic peer review experience!
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rOpenSci retweeted
rOpenSci@rOpenSci4 Apr 2023
[technote] waywiser is Now a Part of rOpenSci 🗺️ 🎉 Assessing models fit to spatial data is hard! The waywiser package makes it a bit easier. @MikeMahoney218 celebrates waywiser joining rOpenSci, and shares a preprint about the details. ropensci.org/blog/2023/04/04… #RStats (1/2)

waywiser is Now a Part of rOpenSci

Plus version 0.3.0 now on CRAN, and a new preprint

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R-universe is now tracking 18000+ R packages! ropensci.org/blog/2023/04/03…

How r-universe searches for packages on CRAN / Bioconductor

How r-universe searches for, and includes, packages on CRAN / Bioconductor that are available on GitHub or GitLab or R-forge.

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Given the recent update from Twitter about the API tier I will only released #rtweet in Github. See the end of this post for more information #rstats llrs.dev/post/2023/03/20/rtw…
Lluís Revilla Sancho@Lluis_Revilla29 Mar 2023
Please #rstats try the latest #rtweet before I send it to CRAN! With this release you can collect even your bookmarks from twitter! It also provides initial support for API v2 for many different functions!! 🥳 (Check the NEWS) docs.ropensci.org/rtweet/ind…
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Replying to @mrworthington @hadleywickham
This may not be quite the answer that you’re looking for but I’ve learned a lot about package development while contributing to other mature packages that follow different conventions (e.g. @rOpenSci or tidyverse). This development guide is also very good devguide.ropensci.org/
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Look what appeared on r-universe: trevorhastie.r-universe.dev/…

glmnet: Lasso and Elastic-Net Regularized Generalized Linear Models

Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression, Cox model,...

trevorhastie.r-universe.dev
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