We’re excited to announce that MICCAI SiG-CompPath is generously sponsoring the monetary awards for the winners of the SELMA3D 2026 Challenge!
We look forward to seeing your innovative solutions!
🚀 We’re excited to announce the #MICCAI2026 SELMA3D Challenge on SSL for 3D LSM image segmentation!
🔬 Featuring diverse 3D microscopy data, with two tasks exploring fixed-data benchmarking and open-data scaling.
📢 Training set now released:
selma3d2026.grand-challenge.…
🚀 Update: The SELMA3D2026 test phase is now open! #MICCAI #MICCAI2026
Participants can now test and submit their solutions on the challenge platform.
We’re looking forward to seeing your solutions!
🚀 We’re excited to announce the #MICCAI2026 SELMA3D Challenge on SSL for 3D LSM image segmentation!
🔬 Featuring diverse 3D microscopy data, with two tasks exploring fixed-data benchmarking and open-data scaling.
📢 Training set now released:
selma3d2026.grand-challenge.…
Ying Chen retweeted
Does brain aging always mean vessel loss?
🧠We found a surprising hypervascularization, driving cognitive decline & blood-brain barrier damage in aging. 👇🧵biorxiv.org/content/10.64898… Led by @MihailMuc
🚀 We’re excited to announce the #MICCAI2026 SELMA3D Challenge on SSL for 3D LSM image segmentation!
🔬 Featuring diverse 3D microscopy data, with two tasks exploring fixed-data benchmarking and open-data scaling.
📢 Training set now released:
selma3d2026.grand-challenge.…
Participation is open to teams and individual researchers from all over the world. #MICCAI2026 #DeepLearning #Microscopy #AI #Biotech #BiomedicalResearch #DataScience #FoundationModel
A cool study lead by our colleague @HarsharanBhatia of RNA-preserving tissue clearing and image-guided transcriptomics!
Most transcriptomics studies sample ~0.001% of a mouse. Which region to choose? Often we guess.
We introduce DISCO-seq🤗flipping the order:
Whole-body 3D imaging with RNA-preserving clearing→ pick ROIs in 3D→ unbiased scRNAseq
Led by @HarsharanBhatia
biorxiv.org/content/10.64898…
Ying Chen retweeted
Most transcriptomics studies sample ~0.001% of a mouse. Which region to choose? Often we guess.
We introduce DISCO-seq🤗flipping the order:
Whole-body 3D imaging with RNA-preserving clearing→ pick ROIs in 3D→ unbiased scRNAseq
Led by @HarsharanBhatia
biorxiv.org/content/10.64898…
Ying Chen retweeted
We are introducing LipiGo 🤗
A programmable DNA–lipid nanocarrier 🧬 with built-in targeting logic.
It de-targets the liver and redirects mRNA delivery into lymphoid organs, enhancing therapies requiring the immune system. by @cerenkimna @kalorintschi biorxiv.org/content/10.1101/…
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🎉 Excited to announce the #MICCAI2025 SELMA3D 2025 challenge on SSL for 3D light-sheet microscopy segmentation!
This year, we are introducing an even larger, more diverse dataset of 3D light-sheet microscopy images
👉 Learn more and join us: selma3d2025.grand-challenge.…
RT @erturklab: See our recent @NatureBiotech study SCP-Nano in flow! Mapping LNPs, AAVs, and DNA nanostructures to track targeting & unseen…
Excited to share our new work for visualizing and analyzing nanoparticles or viruses at cellular resolution across the entire mouse body!
LNP/mRNA therapeutics and AAV-based approaches require cell-level precision to achieve success without significant toxicity to other cells. To enable this, we now introduce SCP-Nano🤗 in @NatureBiotech: an AI-based technology for precision nanotechnology. nature.com/articles/s41587-0…
Congrats @Sissideh!! So proud of you, my friend🥳🥳🥳
#ENDORELIEF #IMSIS2024
Thanks for the award as a great encouragement! As a gynecologist and PhD candidate passionate about endometriosis, I'm grateful for IMSIS's support to young researchers as I dive deeper into Mass Spectrometry Imaging #MSI #MALDI to tackle this disease!
Very excited to share our newest preprint! Our new AI tool MouseMapper provides a pipeline to quantify the changes in peripheral nerves and immune cells in HFD mice.
Imagine seeing a disease's impact on every cell in the body. Now, you can!
We introduce MouseMapper, an AI tool to reveal system-wide disease perturbations. MouseMapper showed obesity-induced changes in facial nerves & body-wide inflammation 👉🏼🧵biorxiv.org/content/10.1101/…
Ying Chen retweeted
Imagine seeing a disease's impact on every cell in the body. Now, you can!
We introduce MouseMapper, an AI tool to reveal system-wide disease perturbations. MouseMapper showed obesity-induced changes in facial nerves & body-wide inflammation 👉🏼🧵biorxiv.org/content/10.1101/…
Looking forward to seeing more works about combining biomedical image or data with AI in the future!
What if we could map every cell in the body, revealing its location and molecular identity? In this @NatureMethods perspective, we discuss the new era of 3D-omics by tissue clearing and AI, called Deep 3D Histology: rdcu.be/dNBe8 PDF: bit.ly/3WaD0QU 🧵👇🏼
Congrats to @Dorie00 @Rami96614090 @moritz_negwer ! A nice cover!
The July issue is live today! nature.com/nmeth/volumes/21/…
The beautiful cover comes from the @erturklab and shows c-Fos+ neuronal mapping in whole mouse brains.
See paper: nature.com/articles/s41592-0…
Ying Chen retweeted
The July issue is live today! nature.com/nmeth/volumes/21/…
The beautiful cover comes from the @erturklab and shows c-Fos+ neuronal mapping in whole mouse brains.
See paper: nature.com/articles/s41592-0…
Excited for the #MICCAI2024 SELMA challenge! Join us to explore 3D light-sheet microscopy image segmentation! @MICCAI_Society
🎉We're thrilled to announce the #MICCAI2024 SELMA challenge on self-supervised learning for 3D light-sheet microscopy image segmentation.
Explore our dataset, which contains 3D light-sheet microscopy images of various labeled structures and is possibly the largest 3D microscopy image challenge dataset available. Join us in advancing 3D image segmentation in biomedical research!
The training set is released now. Check it out: selma3d.grand-challenge.org/…
A mouse-click tool based on deep learning for whole brain cell segmentation and analysis. Really impressive! Worth a try for your own data.
Very excited to share that our DELiVR method is now open access published @NatureMethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s41592-0…
by @Dorie00 @Rami96614090 @moritz_negwer
