Frederik O. Bagger retweeted
@Rigshospitalet @UCPH_BRIC
We are located in sunny and pleasant Copenhagen
Frederik O. Bagger retweeted
Delighted to finally see this out in @LeukemiaJnl. Thanks to great efforts by @MTrempenau @bruhn_mikkel @Mafalda_AP @pundhir_sachin and not least many collaborators. @Rigshospitalet @UCPH_BRIC @UCPH_health
nature.com/articles/s41375-0…
1/n
Frederik O. Bagger retweeted
Top performance by Genomic Medicine dep @Rigshospitalet in @precisionfda challenge: precision.fda.gov/challenges…
🥇in Somatic Variant Calling
🥈 in TMB Estimation
Bioinformatic pipeline based on @gatk_dev
Bedst i verden til at finde kræftmutationer: Amerikanske FDA uddeler guldmedalje til Afdeling for Genomisk Medicin. bit.ly/3gVI9YN #personligmedicin #sundpol @cancer_dk
ALT Leder af sektion for bioinformatik Frederik Otzen Bagger.
Frederik O. Bagger retweeted
New article: Megakaryocytes release #platelets Choudry et al @sangerinstitute @uni_copenhagen @Cambridge_Haem find distinct transcriptional states in different ploidy MK. MK from myocardial infarction pts 🫀 ➡️ specific gene🧬
signature.
bit.ly/2ZD3RbH #openaccess
Frederik O. Bagger retweeted
Fast gene set enrichment analysis #Rstats
Preprint: biorxiv.org/content/10.1101/…
Bioconductor: bioconductor.org/packages/re…
Source: github.com/ctlab/fgsea/
Frederik O. Bagger retweeted
Hey single-cell folks. We are excited to share our work "TENET, single-cell gene regulatory reconstruction framework for single-cell transcriptomics" with @kjwonl lab, now out in @NAR_Open
academic.oup.com/nar/advance…
We hope its useful to the community! 1/5
Brief summary below
Frederik O. Bagger retweeted
Excited to share this work, now online at @LSAjournal
Brief twitter summary:
teapawt.net/kedar_natarajan/status…
Happy reading !
Single-cell large-scale integrative gene regulatory networks from different mouse cell atlases reveals regulatory crosstalk important for single-cell identity @kedar_natarajan @DanishIAS @NATsdu @GenomicsUnit
life-science-alliance.org/co…
Frederik O. Bagger retweeted
174 predicted and validated epitopes COVID-19 vaccine candidates bioRxiv viewer disq.us/t/3n3tk5u @fobinf @immunitrack
Frederik O. Bagger retweeted
How about creating new science prizes that reward teams not individuals? There is much talk about science being a team effort but prizes focus on an individual. How do teams get rewarded?! #Reimagineresearch
Frederik O. Bagger retweeted
Another postdoc position (computational) in my lab focused on micro-environmental vs genetic drivers of cancer - please share! Genetics expertise needed. jobportal.ku.dk/videnskabeli…
Frederik O. Bagger retweeted
Your periodic reminder that geom_sina() ggforce.data-imaginist.com/r… and geom_beeswarm() github.com/eclarke/ggbeeswar…, and even geom_boxplot() are almost always superior in form and function to geom_violin().
And this is why I've stopped showing students geom_violin() and opt for geom_beeswarm() or geom_boxplot() instead xkcd.com/1967/
Frederik O. Bagger retweeted
Friendly reminder for 2 #postdoc positions to study #cellcycle & gene expression using #singlecell genomics. We work with stem cells, singlecell, genomics, CRISPR & bioinformatics.
Deadline: Jan. 31st.
Please RT and help share!
bit.ly/2AAe9Np bit.ly/2F8YTeB
We have 2 Postdoc positions in our group to work on #cellcycle and gene expression regulation using #singlecell methods. Please help share and RT. Feel free to get in touch for more info. Thanks!
bit.ly/2AAe9Np bit.ly/2F8YTeB
Frederik O. Bagger retweeted
Open #postdoc position in my group! Focus on #machinelearning #deeplearning for modeling of regulatory genetic variants and their impact on #enhancer and promoter activities. Apply before February 24. Please share! goo.gl/em4yJf
Frederik O. Bagger retweeted
Just another reminder that I have a postdoc position open in my lab - a computational postdoc in population genomics, see ad: goo.gl/ea1V45. *Application deadline is in 1 week*. Please RT+share the ad with everyone you think may be interested - thanks! #popgen #postdoc
Frederik O. Bagger retweeted
facet_zoom, geom_sina, scale_unit, facet_wrap_paginate, geom_arc, power_trans, geom_bezier #ggplot2 #ggforce
data-imaginist.com/2016/Anno…
Frederik O. Bagger retweeted
Our preprint on transcriptional and epigenetic variability in immune cells: biorxiv.org/content/early/20… @dirk_paul @blueprint_eu
Frederik O. Bagger retweeted
Neat idea combining strip charts and violin plots cran.r-project.org/web/packa… #Rstats
Frederik O. Bagger retweeted
Our study on PVP histone pattern as a signature of active regulatory elements is out nar.oxfordjournals.org/conte…
