Michael L. Rosenberg Assistant Professor at UT Southwestern
Dallas, TX
Joined December 2014
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- Following108
- Followers308
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Daehwan Kim retweeted
A true graph-based genome aligner: HISAT2 and HISAT-Genotype. Align to the genome+12 million SNPs with amazing speed and accuracy, using a graph FM index. This is a technical tour-de-force from @infphilo nature.com/articles/s41587-0β¦
Daehwan Kim retweeted
UTSW's inaugural #UHackMed is underway. Learn more about the two-day event hosted by the Lyda Hill Department of #Bioinformatics u-hackmed.org/
Daehwan Kim retweeted
Our new paper just went up on bioRxiv, describing a comprehensive human gene database that we've been working on for more than 2 years now @elapertea biorxiv.org/content/early/20β¦
Daehwan Kim retweeted
Just out on @bioRxiv
HISAT-genotype and HISAT2: graph-based alignment to the human genome with millions of SNPs integrated, PLUS a new genotyping platform for HLA typing and more biorxiv.org/content/early/20β¦ @infphilo @BenLangmead
Daehwan Kim retweeted
Wake up people: using outdated scientific software is not OK the-scientist.com/?articles.β¦ with comments from @lpachter
Daehwan Kim retweeted
ccb.jhu.edu/software/kraken/ Kraken 1.0 for #metagenomics analysis just released. Thanks @DerrickEWood and Jennifer Lu!
Daehwan Kim retweeted
A tenure-track faculty position in Cell Biology and Molecular Genetics at the University of Maryland.
Great place!
ejobs.umd.edu/postings/53971
Daehwan Kim retweeted
Featured this week: HISAT2, for mapping next-generation sequencing reads to human genomes. Like it? Vote it up! LabWorm.com/Discover
Daehwan Kim retweeted
Welcome to Hopkins Ruibang Luo! Delighted to have another genome assembly expert among our ranks teapawt.net/aquaskyline/status/776β¦
Now I'm a Postdoctoral Fellow at Johns Hopkins for @StevenSalzberg1 and @mike_schatz
Daehwan Kim retweeted
rdcu.be/jIAq See our newly published protocol on how to do RNA-seq analysis with StringTie and HISAT, faster and better than ever
Daehwan Kim retweeted
CLASS v2.1.5 . Fixed small issues, i.e. the wrong predicted transcripts due to rare reads that are than other reads. sourceforge.net/projects/splβ¦
Daehwan Kim retweeted
Our latest "Mash: fast genome and metagenome distance estimation using MinHash" now published in @GenomeBiology genomebiology.biomedcentral.β¦
Daehwan Kim retweeted
Centrifuge: Rapid and sensitive classification of metagenomic sequences biorxiv.org/content/early/20β¦. All of NCBI NR DB indexed in 69 GB.
Daehwan Kim retweeted
Centrifuge: this week's rapid/sensitive metagenomics classifier biorxiv.org/content/early/20β¦
Daehwan Kim retweeted
Centrifuge: rapid and sensitive classification of metagenomic sequences biorxiv.org/cgi/content/shor⦠#bioRxiv
Daehwan Kim retweeted
Have been looking forward to this paper from @infphilo and @StevenSalzberg1 biorxiv.org/content/biorxiv/β¦ FM index based metagenomic classificn
Daehwan Kim retweeted
I'm very much looking forward to my visit to JHU next month! If you're around, stop by the seminar! teapawt.net/idiesjhu/status/712735β¦
Join us for Rob Patro's #Genomics@JHU seminar on 4/5/16 at 10:30 am @nomad421 @BenLangmead idies.jhu.edu/fast-algorithmβ¦
Daehwan Kim retweeted
Released CLASS v2.1.4. Improved the accuracy of predicted transcripts when given annotation. sourceforge.net/p/splicebox/β¦
Daehwan Kim retweeted
Congrats to @BenLangmead for winning 2016 Ben Franklin Award for his work promoting open science! bioinformatics.org/forums/foβ¦