SpikeInterface is an open-source Python framework for analysis of electrophysiology data and spike sorting. https://xitter.cf/t.co/FQKc5VIP3y
Joined June 2022
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Not yet, but implementing it is on our Todo list. For now it's removing, merging, and labeling. The other important new feature is that merging units will not require to recompute any extension, because they get "smartly" merged. The plan is to do the same for splitting!
A new release of the SpikeInterface-GUI is also available, now supporting full manual curation! Check it out as a potential alternative of Phy!
github.com/SpikeInterface/sp…
The most important new feature is the SortingAnalyzer, a new object for postprocessing spike sorting results.
Refer to this guide to update your pipeline from previous versions: spikeinterface.readthedocs.i…
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#neurotwitter #ephys #spikesorting
SpikeInterface version 0.101.0 is released!
You can update your current version with:
>>> pip install -U spikeinterface
It comes with many many bug fixes and new features. Check out the full release notes here:
spikeinterface.readthedocs.i…
SpikeInterface retweeted
Had a fantastic time at the @spikeinterface workshop hosted by @InfAtEd earlier this week! Tons of useful info about state-of-the-art methods in the arcane art of spike sorting ⚡️
Here's @buccino_alessio from @AllenInstitute hammering home the most sobering point of the week...
You can upgrade to the new version with:
>>> pip install -U spikeinterface
And run Kilosort4 "as usual":
#neurotwitter #ephystwitter #spikesorting
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SpikeInterface v0.100.1 has just been released on #PyPi
pypi.org/project/spikeinterf…
A few bug fixes and support for Kilosort4, also via docker!
Release notes here:
spikeinterface.readthedocs.i…
Happy spike sorting!
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#ephys and #spikesorting community!
We are thrilled to announce the "Tools and Methods for Next Generation Electrophysiology" event, happening in Edinburgh from May 27-31.
Registration link: forms.gle/6dEdeR7sD7u6u8rU8
More info on the event: shorturl.at/oqU48
SpikeInterface retweeted
Happening tomorrow - don't miss out... 🧠⬇️
Join us and @buccino_alessio @spikeinterface @AllenInstitute on Nov 7th if you want learn about spike sorting from the experts with a follow-along tutorial covering best-practices for using the expansive SpikeInterface framework. Grab your spot here: eu1.hubs.ly/H0613yy0
#neurotwitter #ephystwitter #spikesorting
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SpikeInterface v0.99.0 has been released on #PyPi!
pypi.org/project/spikeinterf…
Just run this to upgrade your installation:
>>> pip install --upgrade spikeinterface
Check out the release notes here:
spikeinterface.readthedocs.i…
SpikeInterface retweeted
Join us and @buccino_alessio @spikeinterface @AllenInstitute on Nov 7th if you want learn about spike sorting from the experts with a follow-along tutorial covering best-practices for using the expansive SpikeInterface framework. Grab your spot here: eu1.hubs.ly/H0613yy0
SpikeInterface retweeted
It's been a great pleasure to present @spikeinterface and recent updates in #ephys analysis at #ODIN23 at @mitbrainandcog! Lots of amazing neurotech and tools for data processing, modeling, and sharing to bring neuroscience to the next level! Thanks @neurovium for the invitation!
Alessio Buccino (Allen Institute for Neural Dynamics)
SpikeInterface & SpikeForest: Spike sorting in large-scale recordings
@buccino_alessio
#ODIN2023
@mcgovernmit @mitbrainandcog
SpikeInterface retweeted
Now accepted in @IOPPublishing Journal of #Neural #Engineering !
Check out the accepted version here:
iopscience.iop.org/article/1…
Do you use #neuropixels or #highdensity probes? Are your recordings filling up your hard drives?
We got you covered!
In the first preprint from @AllenInstitute for Neural Dynamics, we looked at ways to reduce the footprint of #ephys data.
biorxiv.org/content/10.1101/…
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SpikeInterface retweeted
@spikeinterface is a #Python module that enables you to preprocess extracellular recordings, run and compare *several* spike sorters, and visualize the results. Also have awesome documentation!
#OpenScience #neuroscience @MatthiasHennig6 @buccino_alessio @cole_hurwitz
SpikeInterface retweeted
Neuropixels 2.0 probes are now on sale!
Multi-shank, miniaturized, higher density than 1.0.
To order: neuropixels.org/post/neuropi…
Our paper about the probes: science.org/doi/full/10.1126…
A very exciting new feature is the motion correction framework to compensate for drifts! Check out this tutorial for more info: spikeinterface.readthedocs.i…
This release includes several bug fixes and new features! Check out the main changes here: spikeinterface.readthedocs.i…
#neurotwitter #ephystwitter #spikesorting
SpikeInterface v0.98.0 has been released on #PyPi: pypi.org/project/spikeinterf…
Just run:
>>> pip install --upgrade spikeinterface
SpikeInterface retweeted
With the use of #Neuropixels probes (or similar) for 𝑖𝑛 𝑣𝑖𝑣𝑜 recordings, it is very common to observe probe "drifts", which strongly degrade spike sorting accuracy.
In our recent paper, we looked at several drift correction methods and evaluated their performance!
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A modular approach to handle in-vivo drift correction for high-density extracellular recordings biorxiv.org/cgi/content/shor… #biorxiv_neursci
SpikeInterface retweeted
Do you use #neuropixels or #highdensity probes? Are your recordings filling up your hard drives?
We got you covered!
In the first preprint from @AllenInstitute for Neural Dynamics, we looked at ways to reduce the footprint of #ephys data.
biorxiv.org/content/10.1101/…
(1/n)