Passionate about microbial ecology. Aspiring to travel a lot!
Joined November 2012
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Thomas Jeanne retweeted
decontam functionality is now available through QIIME2. Thanks Jorden Rabasco and QIIME team.
@QIIME2 2023.5 is now available & includes new parallel computing support w @ParslProject, ability to resume failed pipeline runs, provenance replay, decontam actions, and much more. Thank you to all who contributed! #microbiome #bioinformatics forum.qiime2.org/t/qiime-2-2…
Thomas Jeanne retweeted
Healthy #soil is a real powerhouse:
🐞 Habitat for soil #biodiversity
🌤️ Carbon store and #climate regulator
💧 Water tank and purifier
🌻 #Food producer
🏺 Keeper of heritage
Protecting #soilhealth ensures its many functions that enable life on Earth!
via @unccd
My colleague Richard Hogue present a poster at #GSB2023
Long-term effect of crop management practices on Clay soil properties and microbial diversity
Poster number: P98
Spatial, temporal and technical variability in the diversity of prokaryotes and fungi in agricultural soils. @irda_qc #soilhealth #soilmicrobiome #soilbiodiversity #qiime2 Frontiers in soil science doi.org/10.3389/fsoil.2022.9…
Thomas Jeanne retweeted
My new review on bias in microbiome studies is out in the journal Microbiome! microbiomejournal.biomedcent… I originally wrote this as part of my comprehensive exam for @Dal_micro_immun ! I'm glad that it is now being shared with the rest of the field #microbiome
Thomas Jeanne retweeted
Good new work leveraging accurate long-read amplicon sequencing to generate far more comprehensive references for specific environments. Makes standard amplicon profiling more informative and comparable across studies: mbio.asm.org/content/11/5/e0… @msdueholm @MadsAlbertsen85
Thomas Jeanne retweeted
From today, code can be an integral part of a paper published in eLife. Announcing the Executable Research Article, a new open format for research papers where code can be run directly in the browser elifesciences.org/labs/dc5ac…
ALT Welcome to a new ERA of reproducible publishing
Thomas Jeanne retweeted
Want to learn about microbiome bioinformatics from members of the @qiime2 team? Mark your calendars for October 5-9, 2020 for a five-day **online** course! Details at forum.qiime2.org/t/microbiom…
Thomas Jeanne retweeted
À la recherche des vignobles québécois ? Voici une carte ! lapresse.ca/gourmand/alcools… via @lp_lapresse
Thomas Jeanne retweeted
Our PICRUSt2 manuscript is out in Nat. Biotech. rdcu.be/b4yta
Absolutely phenomenal work by @gavin_m_douglas
#16S #microbiome #metagenomics #bioinformatics
Thomas Jeanne retweeted
Our @qiime2 protocols paper is finally online at @currentprotocol! Long time in the making. Endless thanks to the amazing team I got to work with on this, especially Serene Jiang, the other co-1st. A summary of what makes this tutorial useful:
dx.doi.org/10.1002/cpbi.100 1/10
Thomas Jeanne retweeted
This study recommends truncating reads with q=18 before DADA2. Please don't do this! You will lose lots of your useful reads. My first twitterant. 1/18 doi.org/10.1186/s12859-019-3…
Thomas Jeanne retweeted
When data & science are moving this fast, it's hard to keep up. After a short pause, we are very happy to have a new #COVID19 #SARSCoV2 Situation Report Narrative online at nextstrain.org/narratives/nc…. Translations will follow.
Here, we cover what the latest sequences tell us. (1/2)
Thomas Jeanne retweeted
Oh, wow! Check this out.⠀
⠀
A farmer stumbled upon FOUR giant armadillo relatives, called glyptodonts, in Buenos Aires, Argentina. Presumably, the close association suggests they were a social group.
They're about 20,000 years old. ⠀
Images: CEN/Incuapa-Conicet.
Thomas Jeanne retweeted
So happy to see this paper led by @JenniferRocca1 out in @ESAEcology!
We show that rare microbial taxa emerge during community coalescence and drive the maintenance of microbial functions and diversity.
With @DrBioGC @JPWrightEcology @Alex_Washburne esajournals.onlinelibrary.wi…
Thomas Jeanne retweeted
metacoder - A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy). #rstats github.com/grunwaldlab/metac…
Thomas Jeanne retweeted
Thank you 2011 @MarkGerstein - I needed to say exactly this in my slide deck and this figure is quite prescient, especially thinking about commercial cloud. genomebiology.biomedcentral.… – at San Juan, Puerto Rico
Thomas Jeanne retweeted
we’re excited to announce that QIIME 2 was funded in the @CZIScience Essential Open Source Software for Science program! brief details on our plans below, with more info coming soon. thanks to our community and
@CZIScience for the support! @NAUResearch
nau.edu/nau-research/awarded…
Thomas Jeanne retweeted
#workflowr 1.5.0 is now on CRAN:
* New function wflow_quickstart()
* Package options to customize behavior
* Workshop tutorial for teaching workflowr
* Option to suppress the HTML workflowr report
github.com/jdblischak/workfl…
