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🦠 / 🚹🐵🐷🐮🐭🐀🦟🌿🌾🍅Virus-Host protein interactions Network #knowledgebase @postgresql #virology #COVIDー19 #SARSCOV2 #biocuration #interactome #openscience

Lyon, France
Joined July 2014
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VirHostNet 2.0 retweeted
1/ 🚀 Pathoplexus now supports Bundibugyo virus (BDBV), a species of Ebolavirus. BDBV has been associated with past outbreaks of Ebola in the DR Congo and Uganda, & a case was reported today during response to the current Ebola outbreak. pathoplexus.org/ebola-bdbv #ebola #bdbv
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VirHostNet 2.0 retweeted
Since launching support for the Andes virus species of hantavirus two days ago, we've received submissions from four countries' sequencing teams. This is a testament to the rapid response of researchers, sharing real-time data. Read more in our news post: pathoplexus.org/news/2026-05…
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VirHostNet 2.0 retweeted
🧬Ultra fast petabase-scale virus discovery is here! 🚀 In our lab’s newest preprint, Jess explores the biodiversity of Papillomaviruses (PVs) in record time 🧵1/5 👇 🔗: doi.org/10.64898/2026
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Get ready! Negative Strand RNA Virus meeting #NSV2025 registration will open soon! Co-organized with @wendybarclay11, @vsv512 and Paul Duprex. It will be in vibrant Montpellier, south of France, in June 2025! Please RT
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color me skeptical. Actually, given the incredibly broad and bold claims in this paper, color me *extremely* skeptical
🧬Evo, the first foundation model trained at scale on DNA, is a Rosetta Stone for biology. DNA, RNA, and proteins are the fundamental molecules of life—and cracking the code of their complex language is an ongoing grand challenge. 🔬Today in @ScienceMagazine, the labs of Arc Innovation Investigator @BrianHie and Arc Co-Founder @pdhsu explain how Evo captures two fundamental aspects of biology: the multi-modality of the central dogma and the multi-scale nature of evolution. Evo excels at prediction and generation tasks across all of these molecules and their interactions. An exciting example of what Evo can do: the team used it to design a totally new CRISPR system, including a guide RNA that makes Cas9 cut even better. Evo can also design DNA sequences over one million base pairs in length, reaching the size of many real genomes. 🧠Check out the paper now in Science: science.org/doi/10.1126/scie…
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VirHostNet 2.0 retweeted
This is #bioinformatics science fiction but real. Pan-SRA nucleotide search; for free; in minutes 🤯
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VirHostNet 2.0 retweeted
If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/ Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
🎉 Exciting news! We've just published MVP: a Modular Viromics Pipeline 🦠✨ journals.asm.org/doi/epub/10…
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Dr. Babaian (@RNA_Life) and his team are doing big things. Using computational biology and AI, he identified over 150k+ new RNA viruses in only 11 days. That number will grow to 100 million by 2030. Ep. 12 | In Vivo with Dr. Artem Babaian on Planetary Wide Virus Surveillance - youtu.be/N12C6YyPSjg?si=QJrM…
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'Virology—The next fifty years' - a perspective by Eddie Holmes, @GoodrumVirusLab and myself in Cell cell.com/cell/fulltext/S0092…
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VirHostNet 2.0 retweeted
🆁🅴🅲🆁🆄🆃🅴🅼🅴🅽🆃 L'équipe du projet Virome@tlas, financé par #shapemedlyon recherche un ou une ingénieur/ingénieure en bioinformatique. @UnivLyon1 @amsb_prabi
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VirHostNet 2.0 retweeted
We are seeking two highly motivated candidates to work together with our interdisciplinary team to better understand how biogeography shape viral biodiversity ! @ShapemedLyon To postulate : #bioinformatics : tinyurl.com/24jtf6uw #geoinformatics : tinyurl.com/yc4uvep4
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Excited to share Vclust! It's a fast and accurate tool for calculating intergenomic similarities (like ANI) and clustering virus/#phage genomes/contigs according to ICTV and MIUViG standards. 💻 Tool: github.com/refresh-bio/vclus… 📄 Preprint: biorxiv.org/content/10.1101/… Thread! 1/6 ↓
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VirHostNet 2.0 retweeted
The #phylogenetic tree has been a core conceptual tool for #EvolutionaryBiology for nearly 200 years. @RoliRoberts explores the role of the tree as a metaphor, discussing two new #PLOSBiology Essays (by @jlsteenwyk & @caseywdunn) that look to the future plos.io/3VjDSU8
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VirHostNet 2.0 retweeted
An analysis of publicly available viral genomes explores the evolutionary dynamics of host jumps and shows that humans are as much a source of viral spillover events to other animals as they are recipients. rdcu.be/dCuwI
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VirHostNet 2.0 retweeted
The evolutionary drivers and correlates of viral host jumps nature.com/articles/s41559-0…
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VirHostNet 2.0 retweeted
A new pipeline for prioritizing protein-protein interactions for #drugdiscovery, combining machine learning-based scoring of quantitative PPI data, protein complex structure prediction &virtual drug screening ➡️ embopress.org/doi/full/10.10… @IMBA_Vienna @MDC_Berlin @harvardmed
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VirHostNet 2.0 retweeted
Onze nouveaux projets financés par SHAPE-Med@Lyon viennent renforcer la structuration du site Lyon – St Etienne sur la recherche en santé. @UnivLyon1 @univ_lyon2 @CHUdeLyon @Inserm @VetAgroSup @LeVinatier @CNRS @CPELyon @Inria @INRAE_Intl @IARCWHO #centreleonberard #SHAPEMed
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#Drugdesign method using viral #protein interactions to create small molecules, exemplified by potent #antiviral compound derived from KSHV protein with potential #therapeutic applications beyond infectious diseases [co-authored by EVBC member V. Navratil] doi.org/10.1073/pnas.2308776…
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