
🦠 / 🚹🐵🐷🐮🐭🐀🦟🌿🌾🍅Virus-Host protein interactions Network #knowledgebase @postgresql #virology #COVIDー19 #SARSCOV2 #biocuration #interactome #openscience
Lyon, France
Joined July 2014
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VirHostNet 2.0 retweeted
1/ 🚀 Pathoplexus now supports Bundibugyo virus (BDBV), a species of Ebolavirus.
BDBV has been associated with past outbreaks of Ebola in the DR Congo and Uganda, & a case was reported today during response to the current Ebola outbreak.
pathoplexus.org/ebola-bdbv
#ebola #bdbv
VirHostNet 2.0 retweeted
Since launching support for the Andes virus species of hantavirus two days ago, we've received submissions from four countries' sequencing teams. This is a testament to the rapid response of researchers, sharing real-time data. Read more in our news post: pathoplexus.org/news/2026-05…
VirHostNet 2.0 retweeted
🧬Ultra fast petabase-scale virus discovery is here! 🚀
In our lab’s newest preprint, Jess explores the biodiversity of Papillomaviruses (PVs) in record time
🧵1/5 👇
🔗: doi.org/10.64898/2026
VirHostNet 2.0 retweeted
Get ready! Negative Strand RNA Virus meeting #NSV2025 registration will open soon!
Co-organized with @wendybarclay11, @vsv512 and Paul Duprex.
It will be in vibrant Montpellier, south of France, in June 2025!
Please RT
VirHostNet 2.0 retweeted
color me skeptical. Actually, given the incredibly broad and bold claims in this paper, color me *extremely* skeptical
🧬Evo, the first foundation model trained at scale on DNA, is a Rosetta Stone for biology.
DNA, RNA, and proteins are the fundamental molecules of life—and cracking the code of their complex language is an ongoing grand challenge.
🔬Today in @ScienceMagazine, the labs of Arc Innovation Investigator @BrianHie and Arc Co-Founder @pdhsu explain how Evo captures two fundamental aspects of biology: the multi-modality of the central dogma and the multi-scale nature of evolution. Evo excels at prediction and generation tasks across all of these molecules and their interactions.
An exciting example of what Evo can do: the team used it to design a totally new CRISPR system, including a guide RNA that makes Cas9 cut even better. Evo can also design DNA sequences over one million base pairs in length, reaching the size of many real genomes.
🧠Check out the paper now in Science: science.org/doi/10.1126/scie…
VirHostNet 2.0 retweeted
This is #bioinformatics science fiction but real.
Pan-SRA nucleotide search; for free; in minutes 🤯
This Post is from a suspended account. Learn more
VirHostNet 2.0 retweeted
If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/
Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
🎉 Exciting news! We've just published MVP: a Modular Viromics Pipeline 🦠✨
journals.asm.org/doi/epub/10…
VirHostNet 2.0 retweeted
Dr. Babaian (@RNA_Life) and his team are doing big things. Using computational biology and AI, he identified over 150k+ new RNA viruses in only 11 days. That number will grow to 100 million by 2030.
Ep. 12 | In Vivo with Dr. Artem Babaian on Planetary Wide Virus Surveillance - youtu.be/N12C6YyPSjg?si=QJrM…
VirHostNet 2.0 retweeted
'Virology—The next fifty years' - a perspective by Eddie Holmes, @GoodrumVirusLab and myself in Cell
cell.com/cell/fulltext/S0092…
VirHostNet 2.0 retweeted
🆁🅴🅲🆁🆄🆃🅴🅼🅴🅽🆃 L'équipe du projet Virome@tlas, financé par #shapemedlyon recherche un ou une ingénieur/ingénieure en bioinformatique.
@UnivLyon1 @amsb_prabi
VirHostNet 2.0 retweeted
Phylogenetic results and resources are described in this blog post: nextstrain.org/blog/2024-06-… 3/3
VirHostNet 2.0 retweeted
We are seeking two highly motivated candidates to work together with our interdisciplinary team to better understand how biogeography shape viral biodiversity ! @ShapemedLyon
To postulate :
#bioinformatics : tinyurl.com/24jtf6uw
#geoinformatics : tinyurl.com/yc4uvep4
VirHostNet 2.0 retweeted
Excited to share Vclust! It's a fast and accurate tool for calculating intergenomic similarities (like ANI) and clustering virus/#phage genomes/contigs according to ICTV and MIUViG standards.
💻 Tool: github.com/refresh-bio/vclus…
📄 Preprint: biorxiv.org/content/10.1101/…
Thread! 1/6 ↓
VirHostNet 2.0 retweeted
The #phylogenetic tree has been a core conceptual tool for #EvolutionaryBiology for nearly 200 years. @RoliRoberts explores the role of the tree as a metaphor, discussing two new #PLOSBiology Essays (by @jlsteenwyk & @caseywdunn) that look to the future plos.io/3VjDSU8
VirHostNet 2.0 retweeted
An analysis of publicly available viral genomes explores the evolutionary dynamics of host jumps and shows that humans are as much a source of viral spillover events to other animals as they are recipients.
rdcu.be/dCuwI
VirHostNet 2.0 retweeted
The evolutionary drivers and correlates of viral host jumps nature.com/articles/s41559-0…
VirHostNet 2.0 retweeted
Metatranscriptomic Compendium of 55900 RNA Viruses Deciphers Human Health Implication and Ecological roles of RNA Virome in Global Wastewater Treatment Plants biorxiv.org/content/10.1101/…
VirHostNet 2.0 retweeted
A new pipeline for prioritizing protein-protein interactions for #drugdiscovery, combining machine learning-based scoring of quantitative PPI data, protein complex structure prediction &virtual drug screening ➡️ embopress.org/doi/full/10.10… @IMBA_Vienna @MDC_Berlin @harvardmed
VirHostNet 2.0 retweeted
Onze nouveaux projets financés par SHAPE-Med@Lyon viennent renforcer la structuration du site Lyon – St Etienne sur la recherche en santé.
@UnivLyon1 @univ_lyon2 @CHUdeLyon @Inserm @VetAgroSup @LeVinatier @CNRS @CPELyon @Inria @INRAE_Intl @IARCWHO #centreleonberard
#SHAPEMed
VirHostNet 2.0 retweeted
#Drugdesign method using viral #protein interactions to create small molecules, exemplified by potent #antiviral compound derived from KSHV protein with potential #therapeutic applications beyond infectious diseases [co-authored by EVBC member V. Navratil] doi.org/10.1073/pnas.2308776…































