
PhD Candidate @PelletierLab, @SinaiHealth, @UofT 🍁 Advanced Imaging 🔬 | Genome Engineering ✂️ I like to light cells up and watch em dance
Toronto, Canada
Joined July 2017
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Previous submissions to @NikonSmallWorld. Dividing with too many centrosomes! #FluorescenceFriday #Centrosome
Reuben Philip retweeted
I captured this video in my lab to show the power of medicines called T-cell engagers.
Left: T cells move in and out of a cancer tumoroid, largely ignoring it.
Right: Add a T-cell engager, and the T cells attack. Once they recognize their targets, they tear through the tumor.
Reuben Philip retweeted
"If the student is great, they had a great mentor. If the student is bad, they were a bad student"
Apparently being a PhD student who came up with the idea doesn't count.
We are a just and proper civilization...
WHERE'S ED BOYDEN?
Oh. He was only a PhD student when he co-invented optogenetics and performed the first demonstration, so he gets no credit. Instead his advisor gets all the credit.
From National Academy of Sciences: Boyden, "in parallel to his PhD, as an independent side project, co-invented optogenetic control of neurons."
One of the worst snubs in Nobel history IMO!
Reuben Philip retweeted
Tough day to be Ed Boyden. Another casualty of the academic hierarchy.
Obviously Karl and Ed worked together, but it's pretty clear that the idea was Ed's. He came up with it 5 years before the Nature Neuroscience paper was eventually published!
"... in May 2000 I e-mailed the opsin pioneer Janos Lanyi, asking for a clone of the N. pharaonis halorhodopsin, for the purpose of actively controlling neurons with optogenetics. Janos kindly asked his collaborator Richard Needleman to send it to me. But the reality of graduate school was setting in: unfortunately, I had already left Stanford for the summer to take a neuroscience class at the Marine Biology Laboratory in Woods Hole. I asked Richard to send the clone to Karl."
Karl wanted to try a magnetic bead-based stimulation system, but Ed realised that optogenetics could be the way after Nagel et al. published their 2003 PNAS paper.
Ed was the one to propose the idea to Karl. Karl, being higher up the hierarchy than Ed, was the one to then email Nagel asking for the constructs.
Karl then optimised the expression of the constructs, but it was Ed who did the actual experiment showing optogenetics in neurons for the first time:
"Late at night, around 1 a.m. on August 4, 2004, I went into the lab, put a dish of cultured neurons expressing ChR2 into the microscope, patch-clamped a glowing neuron, and triggered the program that I had written to pulse blue light at the neurons. To my amazement, the very first neuron I patched fired precise action potentials in response to optogenetic stimulation with blue light."
Karl did a lot of the work pushing it to in vivo imaging, but what is the prize actually for? In my opinion, the prizes should go to actual discoverers: people who conceive of ideas.
This one could have gone to four people (at least), but if I had to drop one person, I'd probably drop Nagel and give it to Deisseroth, Boyden, and Hegemann. Hegemann had the radical hypothesis that a channel was directly gated by light—Nagel only got involved because Hegemann contacted him to use his tools/methods.
But yeah when the Nobel committee are weighing up a corresponding author (Deisseroth) and a PhD student first-author (Boyden), they're obviously going to go with the senior author. Sad!
BREAKING NEWS
The 2026 #NobelPrize in Physiology or Medicine has been awarded to Karl Deisseroth, Peter Hegemann and Georg Nagel “for their discoveries concerning light-gated ion channels and optogenetics.”
This award-winning microscopy image used AI — igniting controversy in a prestigious competition
go.nature.com/3U0yhUU
Reuben Philip retweeted
So here's a direct test of whether AI can have new ideas. There are some that claim yes, because ML models already contain all the info a human brain does.
Today in Cell we published a new invention from my lab, thread below. We can simply ask, can AI think of the same thing?
Unfortunately, it turns out that this is AI "enhanced." Nikon updated their article to clarify that the colors and organelles are all generated by AI "post-processing" of "grayscale" data. Very unclear what the raw data actually was. nikonsmallworld.com/masters-…
This quoted post is unavailable.
Reuben Philip retweeted
Today in @Nature, we report a new approach to studying human brain development and modeling disease in vivo.
Human neural #assembloids and #organoids have opened new ways to study development in vitro, but they also have important limitations. Transplantation can provide a more physiological environment, yet human cortical cells then develop within a rodent brain that matures much faster, constraining their growth and integration.
To address some of these limitations and obtain more advanced functional readouts relevant to disease biology, we generated #apallial mice, in which ~98% of the cortex and hippocampus fail to form, creating space for transplanted human cortical organoids to grow and integrate extensively.
We call these #xenocortical mice (XCX).
Nearly 7 years in the making. Congratulations to an extraordinary team and wonderful collaborators!
Link to the article below 👇
Reuben Philip retweeted
Thank you to the folks @NikonSmallWorld and this year's panel of judges for selecting my videos for the 2026 Nikon Small World in Motion competition! Have a look at all the winning videos at the link below.
Presenting... 🥁 ... The 2026 Nikon Small World in Motion winners! Congratulations to all of our winners, and thank you again to everyone who entered! The full gallery is available to view now:
nikonsmallworld.com/gallerie…!
Reuben Philip retweeted
AI 4D Cell Biology!
Watch mitochondria reveal their hidden phenotypes! We built MitoSpace, a self-supervised model trained without labels on terabytes of 4D lattice light-sheet movies of single cells. It learns representations that outperform predefined features, predict membrane potential from 4D form alone (R²=0.91), and generalize zero-shot to unseen drugs and human lung organoids.
🎉 Now published in @CellCellPress!
With @DrvAgwl @ZacharyWang379 @ecarkfeld @andremodolo4 @Parth_LFC @hhako2 @GCMcMahon
📄 Paper: cell.com/cell/fulltext/S0092…
🔬 Explorer: mitospace.ai
💻 Code: github.com/schoeneberglab/Mi…
🤗 Model: huggingface.co/schoenebergla…
#AI4DCellBiology #cellbiology #microscopy #LLSM #latticelightsheet #mitochondria #deeplearning #phenomics
Reuben Philip retweeted
Is euchromatin really “open”? 🧬 Using super-resolution imaging🔬 our new study @NatureGenet reveals: Euchromatin forms condensed domains in live cells. Cohesin constrains them and prevents domain mixing for proper transcriptional insulation🚧 🔗nature.com/articles/s41588-0… (1/2)
Reuben Philip retweeted
A few months ago I was browsing google images looking at p53 western blots in the SK-OV-3 cell line for an unrelated project. I noticed an unusual western blot hosted on Thermo Fisher's website which I posted on social media. Usually I just post weird blots to PubPeer. 👇
Reuben Philip retweeted
In a new Science study, researchers show that chromatin exists as a hydrogel that undergoes a volume phase transition between condensed and uncondensed states that correspond to regions of gene activity and silence, respectively.
Learn more in a new #SciencePerspective: scim.ag/4x2vkRX
Reuben Philip retweeted
Out at @nature just now!
nature.com/articles/s41586-0…
We present #RIED, a new paradigm for excitation-free super-resolution microscopy.
We establish chemical super-resolution microscopy using electrochemiluminescence (ECL), chemiluminescence (CL), and bioluminescence (BL).
(1/n)
A massive genomic study has linked mutations in a specific gene to an increased proportion of muscle, decreased levels of belly fat and blood sugar and a reduced risk of conditions including heart disease
go.nature.com/4ghoSzF
Reuben Philip retweeted
New Toettchlab paper alert! Harrison Oatman just published his beautiful work combining software design for "smart" microscopy+optogenetics and some really beautiful work understanding EGFR-driven collective cell migration.
cell.com/cell-systems/fullte…
Reuben Philip retweeted
Do eukaryotes need introns? Seems like they don’t. Very nice use of synthetic genome engineering in yeast to remove all introns and lose the splicosome. cell.com/cell/abstract/S0092…
Reuben Philip retweeted
A must read! Predicting health trajectories form electronic health records:
nature.com/articles/s41586-0…
Reuben Philip retweeted
I found that H2O2 treatment of Petunia flowers creates a "nightsky" like pattern 😯
It's known oxidation degrades anthocyanins, but the pattern was unexpected!
Reuben Philip retweeted
Excited to share that our work on identifying key driver genes in breast cancer is out @Nature! Incredibly grateful to my postdoc mentors @DanielSchramek and Jeff Wrana and to all of the collaborators and funding sources that made this possible nature.com/articles/s41586-0…

































